Variant report

Variant	rs2922312
Chromosome Location	chr2:177496346-177496347
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10199487	0.84[ASN][1000 genomes]
rs1448531	0.83[CHB][hapmap];0.90[JPT][hapmap];0.82[ASN][1000 genomes]
rs1562608	0.90[JPT][hapmap]
rs2594950	0.81[JPT][hapmap]
rs2922310	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2922311	0.87[EUR][1000 genomes]
rs2969363	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4893912	0.90[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834464	chr2:177375743-177534410	Bivalent Enhancer Active TSS Weak transcription Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:177486400-177501200	Weak transcription	Ovary	ovary
2	chr2:177490200-177499600	Weak transcription	Osteobl	bone
3	chr2:177492200-177499800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr2:177492400-177498600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr2:177492600-177499600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr2:177493400-177501200	Weak transcription	Fetal Muscle Trunk	muscle
7	chr2:177493600-177500600	Weak transcription	HUVEC	blood vessel
8	chr2:177494000-177496800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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