Variant report

Variant	rs2923119
Chromosome Location	chr11:10401504-10401505
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:10389794..10392279-chr11:10398849..10401977,3	MCF-7	breast:

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs11042768	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11042775	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2060659	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28658296	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2957661	0.99[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7126751	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430319	chr11:10027543-10711224	Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	75 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:10389000-10401600	Weak transcription	Right Atrium	heart
2	chr11:10391800-10403800	Enhancers	Adipose Nuclei	Adipose
3	chr11:10392800-10403000	Enhancers	NHLF	lung
4	chr11:10394600-10402200	Enhancers	NHDF-Ad	bronchial
5	chr11:10394600-10403000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr11:10398000-10401600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr11:10398000-10403800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr11:10398000-10404000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr11:10398000-10404000	Enhancers	Osteobl	bone
10	chr11:10398400-10401600	Weak transcription	Colon Smooth Muscle	Colon
11	chr11:10398600-10403200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr11:10399200-10401600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr11:10399400-10403200	Weak transcription	Primary monocytes fromperipheralblood	blood
14	chr11:10399400-10403800	Weak transcription	Monocytes-CD14+_RO01746	blood
15	chr11:10399800-10401800	Enhancers	NH-A	brain
16	chr11:10399800-10402800	Enhancers	HSMMtube	muscle
17	chr11:10400000-10403000	Enhancers	Muscle Satellite Cultured Cells	--
18	chr11:10400600-10407200	Weak transcription	Ovary	ovary
19	chr11:10401000-10401800	Enhancers	Skeletal Muscle Male	skeletal muscle
20	chr11:10401000-10403000	Enhancers	HSMM	muscle
21	chr11:10401200-10401600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
22	chr11:10401200-10401600	Enhancers	HUVEC	blood vessel
23	chr11:10401200-10401600	Enhancers	NHEK	skin
24	chr11:10401200-10401800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
25	chr11:10401200-10402200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
26	chr11:10401400-10401600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
27	chr11:10401400-10401600	Enhancers	Fetal Muscle Trunk	muscle
28	chr11:10401400-10401800	Enhancers	Fetal Muscle Leg	muscle
29	chr11:10401400-10401800	Enhancers	Lung	lung
30	chr11:10401400-10402000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
31	chr11:10401400-10402000	Enhancers	Duodenum Smooth Muscle	Duodenum
32	chr11:10401400-10402000	Enhancers	Esophagus	oesophagus
33	chr11:10401400-10402000	Enhancers	Fetal Stomach	stomach
34	chr11:10401400-10402000	Enhancers	Left Ventricle	heart
35	chr11:10401400-10402000	Enhancers	Stomach Smooth Muscle	stomach
36	chr11:10401400-10402200	Enhancers	Breast Myoepithelial Primary Cells	Breast

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