Variant report

Variant	rs2924292
Chromosome Location	chr10:4844046-4844047
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs2924287	0.95[ASN][1000 genomes]
rs2924288	0.97[ASN][1000 genomes]
rs2924291	0.81[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs2961587	0.97[ASN][1000 genomes]
rs2961599	0.97[ASN][1000 genomes]
rs2961600	0.90[ASN][1000 genomes]
rs2961601	0.90[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2961608	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv894787	chr10:4385379-4857717	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
2	nsv894792	chr10:4832920-5498724	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:4841000-4844600	Weak transcription	HMEC	breast
2	chr10:4841000-4844800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr10:4841800-4851200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr10:4842000-4844800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
5	chr10:4843800-4845600	Enhancers	NHEK	skin
6	chr10:4843800-4846000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr10:4844000-4845000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr10:4844000-4845000	Weak transcription	NHDF-Ad	bronchial
9	chr10:4844000-4848800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
10	chr10:4844000-4850400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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