Variant report

Variant	rs2924798
Chromosome Location	chr6:74029396-74029397
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs471908	1.00[CHB][hapmap];0.89[YRI][hapmap];0.84[AFR][1000 genomes];0.94[EUR][1000 genomes]
rs472136	0.84[AFR][1000 genomes];0.94[EUR][1000 genomes]
rs477004	1.00[CHB][hapmap];0.80[EUR][1000 genomes]
rs503322	0.88[EUR][1000 genomes]
rs503325	0.92[EUR][1000 genomes]
rs510340	0.90[EUR][1000 genomes]
rs517471	1.00[CHB][hapmap];0.89[YRI][hapmap];0.84[AFR][1000 genomes];0.94[EUR][1000 genomes]
rs540675	0.93[AFR][1000 genomes];0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs543526	0.84[AFR][1000 genomes];0.94[EUR][1000 genomes]
rs556627	1.00[CHB][hapmap];0.84[AFR][1000 genomes];0.94[EUR][1000 genomes]
rs573561	0.82[EUR][1000 genomes]
rs575266	0.84[AFR][1000 genomes];0.94[EUR][1000 genomes]
rs780286	1.00[CHB][hapmap];0.84[EUR][1000 genomes]
rs780299	0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3410973	chr6:73716033-74419545	Active TSS Bivalent Enhancer Flanking Active TSS Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	191 gene(s)	inside rSNPs	diseases
2	nsv518874	chr6:74014468-74041424	Flanking Active TSS Active TSS Weak transcription Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
3	nsv966628	chr6:74020000-74034657	Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Weak transcription Transcr. at gene 5' and 3' Enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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