Variant report

Variant	rs2925333
Chromosome Location	chr3:101583676-101583677
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:101577239..101580060-chr3:101581582..101584089,2	K562	blood:
2	chr3:101580233..101583305-chr3:101583539..101587292,4	MCF-7	breast:
3	chr3:101559255..101562084-chr3:101582686..101584225,2	K562	blood:
4	chr3:101578560..101581367-chr3:101581582..101584518,2	K562	blood:
5	chr3:101583187..101585591-chr3:101588676..101591535,3	MCF-7	breast:

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs14134	0.82[AFR][1000 genomes];0.96[AMR][1000 genomes];0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2925332	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2926539	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2926540	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs587555	0.80[ASN][1000 genomes]
rs592332	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs592779	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs599849	0.93[AMR][1000 genomes];0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs601225	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs618901	0.84[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs622122	0.93[AMR][1000 genomes];0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs654219	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs665374	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs677011	0.80[ASN][1000 genomes]
rs678354	0.80[ASN][1000 genomes]
rs680508	0.80[ASN][1000 genomes]
rs681573	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs688058	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs694293	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv497784	chr3:101315009-102092989	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
2	nsv997407	chr3:101384031-101611391	Strong transcription Enhancers Active TSS Transcr. at gene 5' and 3' Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	76 gene(s)	inside rSNPs	diseases
3	nsv536675	chr3:101384031-101611391	Weak transcription Flanking Active TSS Strong transcription Enhancers Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	76 gene(s)	inside rSNPs	diseases
4	esv3351469	chr3:101511702-101866448	Weak transcription Enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS Flanking Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	51 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:76 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:101570400-101598400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr3:101576400-101586400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr3:101576400-101586800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr3:101576600-101586200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
5	chr3:101577200-101586200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr3:101579200-101584800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
7	chr3:101579200-101586400	Weak transcription	Fetal Kidney	kidney
8	chr3:101579200-101586400	Weak transcription	K562	blood
9	chr3:101579400-101584000	Weak transcription	Right Ventricle	heart
10	chr3:101579400-101584200	Weak transcription	Hela-S3	cervix
11	chr3:101579400-101584400	Weak transcription	HepG2	liver
12	chr3:101579400-101584800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
13	chr3:101579400-101586200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
14	chr3:101579400-101586400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
15	chr3:101579400-101586400	Weak transcription	Small Intestine	intestine
16	chr3:101579400-101586600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
17	chr3:101579400-101587200	Weak transcription	NHEK	skin
18	chr3:101579400-101587400	Weak transcription	Fetal Muscle Leg	muscle
19	chr3:101579400-101587600	Weak transcription	Aorta	Aorta
20	chr3:101579400-101587600	Weak transcription	Gastric	stomach
21	chr3:101579400-101587600	Weak transcription	Skeletal Muscle Male	skeletal muscle
22	chr3:101579400-101587800	Weak transcription	Brain Hippocampus Middle	brain
23	chr3:101579400-101588600	Weak transcription	Esophagus	oesophagus
24	chr3:101580000-101587400	Weak transcription	Fetal Lung	lung
25	chr3:101580400-101584400	Weak transcription	HUVEC	blood vessel
26	chr3:101580400-101587600	Weak transcription	Placenta Amnion	Placenta Amnion
27	chr3:101580600-101584000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
28	chr3:101580600-101584800	Weak transcription	HUES48 Cell Line	embryonic stem cell
29	chr3:101580600-101586000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
30	chr3:101580800-101584400	Weak transcription	A549	lung
31	chr3:101580800-101584600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
32	chr3:101580800-101584600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
33	chr3:101580800-101587400	Weak transcription	HMEC	breast
34	chr3:101580800-101587600	Weak transcription	Placenta	Placenta
35	chr3:101580800-101588600	Weak transcription	NHDF-Ad	bronchial
36	chr3:101581000-101586200	Weak transcription	Rectal Smooth Muscle	rectum
37	chr3:101581000-101586400	Weak transcription	Colon Smooth Muscle	Colon
38	chr3:101581200-101586400	Weak transcription	Pancreas	Pancrea
39	chr3:101581200-101587400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
40	chr3:101581200-101587400	Weak transcription	Primary B cells from cord blood	blood
41	chr3:101581200-101587600	Weak transcription	Primary monocytes fromperipheralblood	blood
42	chr3:101581400-101584200	Weak transcription	NH-A	brain
43	chr3:101581400-101584200	Weak transcription	NHLF	lung
44	chr3:101581400-101584400	Weak transcription	Muscle Satellite Cultured Cells	--
45	chr3:101581400-101584800	Weak transcription	Primary T cells from cord blood	blood
46	chr3:101581400-101586400	Weak transcription	Duodenum Mucosa	Duodenum
47	chr3:101581400-101586400	Weak transcription	Duodenum Smooth Muscle	Duodenum
48	chr3:101581400-101586400	Weak transcription	Stomach Smooth Muscle	stomach
49	chr3:101581400-101586600	Weak transcription	Primary B cells from peripheral blood	blood
50	chr3:101581400-101587200	Weak transcription	Sigmoid Colon	Sigmoid Colon

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