Variant report

Variant	rs2925352
Chromosome Location	chr15:41189005-41189006
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:41186714..41189408-chr15:41192146..41195371,4	MCF-7	breast:
2	chr15:41044630..41047663-chr15:41185217..41189065,4	K562	blood:
3	chr15:41188067..41190657-chr15:41190736..41192899,3	K562	blood:
4	chr15:41187545..41189858-chr15:41220285..41222026,2	K562	blood:
5	chr15:41135697..41137573-chr15:41186789..41189457,2	MCF-7	breast:
6	chr15:41135103..41140677-chr15:41182913..41189081,12	MCF-7	breast:
7	chr15:40990437..40992433-chr15:41186523..41189273,2	K562	blood:

Variant related genes	Relation type
ENSG00000128917	Chromatin interaction
ENSG00000261183	Chromatin interaction
ENSG00000051180	Chromatin interaction
ENSG00000166145	Chromatin interaction
ENSG00000137824	Chromatin interaction

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs11855507	0.98[AMR][1000 genomes]
rs2008102	0.85[EUR][1000 genomes]
rs611694	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs686038	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9806683	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv904101	chr15:40979651-41275014	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	98 gene(s)	inside rSNPs	diseases
2	esv1819092	chr15:41017682-41255750	Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Flanking Active TSS Weak transcription Strong transcription Active TSS Enhancers Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	83 gene(s)	inside rSNPs	diseases
3	nsv904102	chr15:41046883-41201699	Strong transcription Flanking Active TSS Enhancers Weak transcription Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
4	nsv1054764	chr15:41068625-41196410	Active TSS Strong transcription Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
5	nsv569228	chr15:41106485-41194151	Enhancers Flanking Active TSS Genic enhancers Active TSS Strong transcription Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
6	nsv904103	chr15:41123172-41275014	Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	60 gene(s)	inside rSNPs	diseases
7	nsv904104	chr15:41149824-41234932	Flanking Active TSS Enhancers Bivalent Enhancer Genic enhancers Weak transcription Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
8	nsv904105	chr15:41149824-41275014	Flanking Bivalent TSS/Enh Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	57 gene(s)	inside rSNPs	diseases
9	esv1819792	chr15:41184722-41234825	Weak transcription Active TSS Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
10	nsv819345	chr15:41188313-41191222	Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription Strong transcription Genic enhancers	Chromatin interactive region	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:41187600-41191200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr15:41187600-41191200	Weak transcription	Aorta	Aorta
3	chr15:41187600-41194400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
4	chr15:41187800-41195400	Weak transcription	Fetal Kidney	kidney
5	chr15:41188000-41189400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr15:41188000-41190800	Weak transcription	H9 Cell Line	embryonic stem cell
7	chr15:41188000-41190800	Weak transcription	Ovary	ovary
8	chr15:41188000-41191000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr15:41188000-41191000	Weak transcription	Thymus	Thymus
10	chr15:41188000-41191000	Weak transcription	A549	lung
11	chr15:41188000-41191400	Weak transcription	Pancreatic Islets	Pancreatic Islet
12	chr15:41188000-41191800	Weak transcription	Psoas Muscle	Psoas
13	chr15:41188000-41192800	Strong transcription	Brain Inferior Temporal Lobe	brain
14	chr15:41188000-41196000	Weak transcription	Right Atrium	heart
15	chr15:41188200-41189600	Weak transcription	Rectal Mucosa Donor 29	rectum
16	chr15:41188200-41190000	Weak transcription	H1 Cell Line	embryonic stem cell
17	chr15:41188200-41190800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
18	chr15:41188200-41190800	Weak transcription	Brain Angular Gyrus	brain
19	chr15:41188200-41190800	Weak transcription	Stomach Smooth Muscle	stomach
20	chr15:41188200-41191000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
21	chr15:41188200-41191000	Weak transcription	Colonic Mucosa	Colon
22	chr15:41188200-41191000	Weak transcription	Esophagus	oesophagus
23	chr15:41188200-41191000	Weak transcription	Gastric	stomach
24	chr15:41188200-41191000	Weak transcription	HSMMtube	muscle
25	chr15:41188200-41191200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
26	chr15:41188200-41191200	Weak transcription	Placenta Amnion	Placenta Amnion
27	chr15:41188200-41191400	Weak transcription	Brain Substantia Nigra	brain
28	chr15:41188200-41192400	Strong transcription	Placenta	Placenta
29	chr15:41188200-41193200	Strong transcription	Primary monocytes fromperipheralblood	blood
30	chr15:41188200-41193800	Strong transcription	iPS-18 Cell Line	embryonic stem cell
31	chr15:41188200-41194600	Strong transcription	Fetal Muscle Leg	muscle
32	chr15:41188200-41195800	Weak transcription	Stomach Mucosa	stomach
33	chr15:41188200-41196000	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
34	chr15:41188200-41196200	Weak transcription	Fetal Brain Male	brain
35	chr15:41188200-41197200	Strong transcription	HUES6 Cell Line	embryonic stem cell
36	chr15:41188200-41197200	Strong transcription	iPS-20b Cell Line	embryonic stem cell
37	chr15:41188200-41197600	Strong transcription	HUES64 Cell Line	embryonic stem cell
38	chr15:41188200-41197800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
39	chr15:41188200-41198000	Strong transcription	HUES48 Cell Line	embryonic stem cell
40	chr15:41188200-41198800	Weak transcription	Small Intestine	intestine
41	chr15:41188400-41189400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
42	chr15:41188400-41189400	Weak transcription	Brain Hippocampus Middle	brain
43	chr15:41188400-41189800	Weak transcription	Fetal Brain Female	brain
44	chr15:41188400-41190000	Weak transcription	Primary T cells from cord blood	blood
45	chr15:41188400-41190400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
46	chr15:41188400-41190400	Strong transcription	NH-A	brain
47	chr15:41188400-41190600	Weak transcription	Duodenum Mucosa	Duodenum
48	chr15:41188400-41190800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
49	chr15:41188400-41190800	Weak transcription	Colon Smooth Muscle	Colon
50	chr15:41188400-41190800	Weak transcription	Rectal Mucosa Donor 31	rectum

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