Variant report

Variant	rs2926165
Chromosome Location	chr5:146269583-146269584
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs11167954	1.00[EUR][1000 genomes]
rs1383166	1.00[EUR][1000 genomes]
rs2915835	1.00[EUR][1000 genomes]
rs2963081	1.00[YRI][hapmap];0.83[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs6860039	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1015804	chr5:146066000-146788233	Bivalent/Poised TSS Weak transcription Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
2	nsv537915	chr5:146066000-146788233	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
3	nsv519847	chr5:146166378-146812647	Bivalent/Poised TSS Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
4	nsv599938	chr5:146169511-146806365	Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
5	nsv869238	chr5:146179403-146787986	Enhancers Weak transcription Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:146263000-146270400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr5:146267400-146271000	Enhancers	iPS-18 Cell Line	embryonic stem cell
3	chr5:146267400-146271200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr5:146267400-146272800	Enhancers	Cortex derived primary cultured neurospheres	brain
5	chr5:146267600-146271000	Enhancers	ES-I3 Cell Line	embryonic stem cell
6	chr5:146267600-146271000	Enhancers	Brain Substantia Nigra	brain
7	chr5:146268000-146269800	Enhancers	Brain Cingulate Gyrus	brain
8	chr5:146268200-146272800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr5:146268200-146272800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr5:146268400-146270800	Enhancers	iPS-20b Cell Line	embryonic stem cell
11	chr5:146268400-146271000	Enhancers	HUES64 Cell Line	embryonic stem cell
12	chr5:146268400-146271400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr5:146268400-146272000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr5:146268600-146269800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
15	chr5:146268800-146269800	Weak transcription	Brain Hippocampus Middle	brain
16	chr5:146268800-146270200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
17	chr5:146268800-146274200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
18	chr5:146269000-146270000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
19	chr5:146269000-146272600	Weak transcription	Brain Angular Gyrus	brain
20	chr5:146269000-146274200	Weak transcription	Brain Inferior Temporal Lobe	brain
21	chr5:146269200-146271000	Enhancers	HUES48 Cell Line	embryonic stem cell
22	chr5:146269200-146271000	Enhancers	HUES6 Cell Line	embryonic stem cell
23	chr5:146269400-146269800	Weak transcription	Brain Anterior Caudate	brain
24	chr5:146269400-146270800	Enhancers	Primary monocytes fromperipheralblood	blood
25	chr5:146269400-146271000	Enhancers	Primary hematopoietic stem cells short term culture	blood

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