Variant report

Variant	rs2927567
Chromosome Location	chr9:96096243-96096244
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10821123	0.81[ASW][hapmap]
rs10992716	0.91[ASW][hapmap];0.81[CEU][hapmap];0.86[CHB][hapmap]
rs13293217	0.82[CHB][hapmap]
rs2991378	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2991379	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3001450	0.83[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs3001451	0.83[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs3763634	0.82[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893576	chr9:95789960-96158277	Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
2	nsv893580	chr9:95855100-96099377	Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Active TSS Weak transcription Genic enhancers Strong transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
3	nsv893582	chr9:95963114-96116937	Bivalent Enhancer Bivalent/Poised TSS Weak transcription Enhancers Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	nsv893584	chr9:96002983-96116937	Enhancers Bivalent Enhancer Weak transcription Bivalent/Poised TSS Strong transcription Flanking Active TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs2927567	CENPP	cis	cerebellum	SCAN
rs2927567	ANKRD19	cis	cerebellum	SCAN

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:96068400-96100400	Weak transcription	Brain Inferior Temporal Lobe	brain
2	chr9:96081000-96100600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr9:96083200-96100400	Weak transcription	Fetal Stomach	stomach
4	chr9:96089200-96099400	Weak transcription	Fetal Brain Female	brain
5	chr9:96091400-96096400	Strong transcription	HUES48 Cell Line	embryonic stem cell
6	chr9:96092000-96096400	Strong transcription	HUES64 Cell Line	embryonic stem cell
7	chr9:96093400-96096400	Strong transcription	H9 Cell Line	embryonic stem cell
8	chr9:96094000-96099800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
9	chr9:96094400-96099000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr9:96094800-96096800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
11	chr9:96095000-96100000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
12	chr9:96095200-96099800	Weak transcription	Rectal Mucosa Donor 29	rectum
13	chr9:96095400-96096400	Strong transcription	ES-I3 Cell Line	embryonic stem cell
14	chr9:96095600-96097000	Weak transcription	H1 Cell Line	embryonic stem cell
15	chr9:96096200-96097800	Strong transcription	HUES6 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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