Variant report

Variant	rs293021
Chromosome Location	chr5:58009420-58009421
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs1158196	0.89[AFR][1000 genomes]
rs149351	0.85[AFR][1000 genomes]
rs158986	0.95[AFR][1000 genomes];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs158988	0.92[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs158991	0.92[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs158992	0.94[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs158994	0.94[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs158995	0.92[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs158998	0.94[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs158999	0.82[AFR][1000 genomes]
rs159001	0.94[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs159009	0.92[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs1833613	0.91[AFR][1000 genomes];0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2591921	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2591923	0.95[AFR][1000 genomes];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2662624	0.95[AFR][1000 genomes];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs290572	0.84[AFR][1000 genomes]
rs293004	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs293016	0.93[AFR][1000 genomes];0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs293017	0.93[AFR][1000 genomes];0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs293019	0.85[AFR][1000 genomes]
rs293024	0.92[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs293028	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs293030	0.85[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs293031	0.88[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs49960	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58662773	0.89[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2830363	chr5:57893949-58555491	Weak transcription Active TSS Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv1029145	chr5:57905821-58141221	Active TSS Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv830311	chr5:57912546-58105636	Enhancers Active TSS Strong transcription Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:57997800-58012200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr5:58001800-58013000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr5:58009200-58009800	Weak transcription	Liver	Liver

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