Variant report

Variant	rs293036
Chromosome Location	chr5:94277241-94277242
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	JUND	chr5:94277060-94277260	H1-hESC	embryonic stem cell:	n/a	n/a

Variant related genes	Relation type
MCTP1	TF binding region

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs159025	0.89[ASN][1000 genomes]
rs293037	1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs293048	0.85[ASN][1000 genomes]
rs293050	0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs39624	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs469708	0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:94270800-94285200	Weak transcription	Primary B cells from cord blood	blood
2	chr5:94272400-94278200	Strong transcription	Monocytes-CD14+_RO01746	blood
3	chr5:94272600-94278000	Strong transcription	Primary monocytes fromperipheralblood	blood
4	chr5:94272800-94281800	Weak transcription	Left Ventricle	heart
5	chr5:94272800-94290800	Weak transcription	Lung	lung
6	chr5:94273400-94277400	Strong transcription	Primary neutrophils fromperipheralblood	blood
7	chr5:94274200-94289800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr5:94274800-94285400	Weak transcription	Muscle Satellite Cultured Cells	--
9	chr5:94275200-94278000	Strong transcription	Primary hematopoietic stem cells	blood
10	chr5:94275400-94290600	Weak transcription	Dnd41	blood
11	chr5:94275800-94277600	Weak transcription	HUVEC	blood vessel
12	chr5:94275800-94281800	Weak transcription	Adipose Nuclei	Adipose
13	chr5:94275800-94288000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr5:94275800-94288000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
15	chr5:94276800-94277600	Enhancers	iPS-15b Cell Line	embryonic stem cell
16	chr5:94276800-94277800	Enhancers	HUES6 Cell Line	embryonic stem cell
17	chr5:94276800-94278000	Enhancers	ES-I3 Cell Line	embryonic stem cell
18	chr5:94276800-94278000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
19	chr5:94277000-94277400	Enhancers	iPS-20b Cell Line	embryonic stem cell
20	chr5:94277000-94277400	Enhancers	HMEC	breast
21	chr5:94277000-94277600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
22	chr5:94277000-94277800	Enhancers	HUES48 Cell Line	embryonic stem cell
23	chr5:94277000-94277800	Enhancers	HUES64 Cell Line	embryonic stem cell
24	chr5:94277000-94278200	Strong transcription	Primary T cells from cord blood	blood
25	chr5:94277200-94277400	Weak transcription	Brain Anterior Caudate	brain
26	chr5:94277200-94278000	Strong transcription	GM12878-XiMat	blood

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