Variant report

Variant	rs2932090
Chromosome Location	chr12:48751704-48751705
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr12:48740296..48746434-chr12:48748194..48754526,9	MCF-7	breast:
2	chr12:48741301..48746348-chr12:48747901..48753728,9	MCF-7	breast:
3	chr12:48744030..48746480-chr12:48749780..48752086,4	K562	blood:

Variant related genes	Relation type
ENSG00000167528	Chromatin interaction
ENSG00000257735	Chromatin interaction

Extended variants
information (count: 41 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs1074174	0.82[EUR][1000 genomes]
rs10783239	0.83[EUR][1000 genomes]
rs10783249	0.84[ASN][1000 genomes]
rs1552551	0.83[EUR][1000 genomes]
rs1906717	0.87[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs2054902	0.95[EUR][1000 genomes]
rs2130096	0.81[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2258342	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2468950	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2634669	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2634679	0.95[EUR][1000 genomes]
rs2634685	0.91[ASN][1000 genomes]
rs2732440	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2732446	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2732451	0.95[EUR][1000 genomes]
rs2732455	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2732458	0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2732459	0.93[ASN][1000 genomes]
rs2732460	0.91[EUR][1000 genomes]
rs2732464	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2732474	0.87[EUR][1000 genomes]
rs2732475	0.90[EUR][1000 genomes]
rs2732476	0.90[EUR][1000 genomes]
rs2732477	0.88[EUR][1000 genomes]
rs2732478	0.90[EUR][1000 genomes]
rs2732482	0.91[ASN][1000 genomes]
rs2732487	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2932091	0.89[ASN][1000 genomes]
rs4760623	0.82[EUR][1000 genomes]
rs60908321	0.95[EUR][1000 genomes]
rs901962	0.81[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs987986	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758307	chr12:48429702-48825499	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	57 gene(s)	inside rSNPs	diseases
2	esv2759898	chr12:48429702-48825499	Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	57 gene(s)	inside rSNPs	diseases
3	nsv8971	chr12:48536526-48758501	Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Strong transcription Bivalent/Poised TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
4	esv34439	chr12:48541757-48779562	Bivalent/Poised TSS Flanking Active TSS Weak transcription Active TSS Enhancers Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	39 gene(s)	inside rSNPs	diseases
5	esv2757502	chr12:48547128-48779562	Genic enhancers Flanking Active TSS Enhancers Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	39 gene(s)	inside rSNPs	diseases
6	nsv427911	chr12:48670336-48979396	Weak transcription Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Enhancers Bivalent Enhancer ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases
7	nsv832402	chr12:48686761-48851020	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
8	nsv826362	chr12:48693048-48768853	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
9	nsv975606	chr12:48748764-48784504	Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region Chromatin interactive region	7 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs2932090	ZNF641	cis	Whole Blood	GTEx

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:48745400-48755800	Weak transcription	Ovary	ovary
2	chr12:48745400-48757200	Weak transcription	Right Ventricle	heart
3	chr12:48745600-48762400	Weak transcription	Aorta	Aorta
4	chr12:48745800-48752200	Weak transcription	Fetal Intestine Small	intestine
5	chr12:48746000-48752800	Weak transcription	Skeletal Muscle Male	skeletal muscle
6	chr12:48746000-48756600	Weak transcription	Brain Cingulate Gyrus	brain
7	chr12:48746200-48754600	Weak transcription	Adipose Nuclei	Adipose
8	chr12:48746200-48756800	Weak transcription	Brain Anterior Caudate	brain
9	chr12:48746200-48757200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
10	chr12:48746400-48752800	Weak transcription	Left Ventricle	heart
11	chr12:48746400-48753000	Weak transcription	Brain Hippocampus Middle	brain
12	chr12:48746400-48757800	Weak transcription	Right Atrium	heart
13	chr12:48746400-48759400	Weak transcription	Brain Substantia Nigra	brain
14	chr12:48746400-48760400	Weak transcription	Brain Angular Gyrus	brain
15	chr12:48746400-48761400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
16	chr12:48746600-48753400	Weak transcription	Skeletal Muscle Female	skeletal muscle
17	chr12:48746600-48755800	Weak transcription	Psoas Muscle	Psoas
18	chr12:48746600-48756400	Weak transcription	Brain Inferior Temporal Lobe	brain
19	chr12:48746600-48762400	Weak transcription	Lung	lung
20	chr12:48746800-48751800	Weak transcription	Pancreas	Pancrea
21	chr12:48746800-48752200	Weak transcription	Stomach Smooth Muscle	stomach
22	chr12:48746800-48755400	Weak transcription	K562	blood
23	chr12:48750800-48755800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland

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