Variant report
| Variant | rs2933351 |
|---|---|
| Chromosome Location | chr12:40920110-40920111 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:3)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
(count:3 , 50 per page) page:
1
| No. | lncRNA name | Chromosome Location | lncRNA alias |
|---|---|---|---|
| 1 | lnc-CNTN1-1 | chr12:40920075-40920128 | XLOC_009713 |
| 2 | lnc-CNTN1-1 | chr12:40920075-40920128 | XLOC_009713 |
| 3 | lnc-CNTN1-1 | chr12:40920075-40920128 | NONHSAT027733 |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:28)
| rs_ID | r2[population] |
|---|---|
| rs11564230 | 0.85[CHB][hapmap] |
| rs1352938 | 1.00[YRI][hapmap];0.80[AFR][1000 genomes] |
| rs1444214 | 0.82[ASN][1000 genomes] |
| rs1444217 | 0.80[ASN][1000 genomes] |
| rs1444222 | 0.80[ASN][1000 genomes] |
| rs1492313 | 0.80[ASN][1000 genomes] |
| rs1838351 | 0.82[ASN][1000 genomes] |
| rs2588394 | 0.83[ASN][1000 genomes] |
| rs2588401 | 0.80[ASN][1000 genomes] |
| rs2588402 | 0.80[ASN][1000 genomes] |
| rs2588411 | 0.80[ASN][1000 genomes] |
| rs2638862 | 0.81[ASN][1000 genomes] |
| rs2638863 | 0.80[ASN][1000 genomes] |
| rs2638864 | 0.80[ASN][1000 genomes] |
| rs2638865 | 0.80[ASN][1000 genomes] |
| rs2638867 | 0.81[ASN][1000 genomes] |
| rs2638869 | 0.83[ASN][1000 genomes] |
| rs2638875 | 0.82[ASN][1000 genomes] |
| rs2638882 | 0.91[AMR][1000 genomes];0.88[ASN][1000 genomes] |
| rs2638883 | 0.81[ASN][1000 genomes] |
| rs2920827 | 0.82[ASN][1000 genomes] |
| rs2933367 | 0.83[ASN][1000 genomes] |
| rs2933373 | 0.82[ASN][1000 genomes] |
| rs2933376 | 0.82[ASN][1000 genomes] |
| rs4768293 | 0.84[YRI][hapmap] |
| rs7139187 | 0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs719227 | 0.82[ASN][1000 genomes] |
| rs719228 | 0.82[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv899033 | chr12:40758652-41122288 | Bivalent/Poised TSS Enhancers Strong transcription Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 23 gene(s) | inside rSNPs | diseases |
| 2 | nsv8970 | chr12:40904094-40951213 | Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 14 gene(s) | inside rSNPs | diseases |
| 3 | esv3388339 | chr12:40917344-40931738 | Enhancers Weak transcription | TF binding regionlncRNA | 13 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
