Variant report

Variant	rs2933610
Chromosome Location	chr5:116031427-116031428
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs1027289	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[YRI][hapmap]
rs163809	1.00[CEU][hapmap]
rs2416444	0.84[EUR][1000 genomes]
rs2933647	0.82[EUR][1000 genomes]
rs34358197	0.97[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2763490	chr5:115918339-116138525	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv830456	chr5:115969066-116170718	Bivalent Enhancer Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv527974	chr5:115987168-116303678	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv462403	chr5:115994775-116284378	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv599485	chr5:115994775-116284378	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	nsv1030056	chr5:116008971-116278725	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:116016000-116032000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr5:116030400-116032000	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr5:116030400-116032200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr5:116030800-116032000	Weak transcription	Fetal Brain Male	brain
5	chr5:116031000-116032000	Enhancers	GM12878-XiMat	blood
6	chr5:116031000-116032800	Enhancers	iPS-18 Cell Line	embryonic stem cell
7	chr5:116031200-116032200	Enhancers	ES-I3 Cell Line	embryonic stem cell
8	chr5:116031400-116032600	Enhancers	HUES6 Cell Line	embryonic stem cell
9	chr5:116031400-116032600	Enhancers	HUES64 Cell Line	embryonic stem cell
10	chr5:116031400-116032600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
11	chr5:116031400-116032600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
12	chr5:116031400-116032600	Enhancers	Fetal Lung	lung
13	chr5:116031400-116032800	Enhancers	iPS-20b Cell Line	embryonic stem cell
14	chr5:116031400-116032800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr5:116031400-116033000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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