Variant report
Variant | rs2934595 |
---|---|
Chromosome Location | chr14:47052374-47052375 |
allele | A/T |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
No data |
No data |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs10129937 | 0.80[AMR][1000 genomes] |
rs10135287 | 0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes] |
rs10151052 | 0.88[AMR][1000 genomes];0.87[EUR][1000 genomes] |
rs10400796 | 0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes] |
rs12161880 | 0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes] |
rs12586827 | 0.81[ASN][1000 genomes] |
rs1381637 | 0.83[AMR][1000 genomes];0.87[EUR][1000 genomes] |
rs1381642 | 0.84[EUR][1000 genomes] |
rs1462397 | 0.84[EUR][1000 genomes] |
rs1462399 | 0.84[EUR][1000 genomes] |
rs1494081 | 0.95[ASN][1000 genomes] |
rs1494090 | 0.96[ASN][1000 genomes] |
rs17117439 | 0.93[ASN][1000 genomes] |
rs17117445 | 0.95[ASN][1000 genomes] |
rs17117451 | 0.95[ASN][1000 genomes] |
rs17117511 | 0.96[ASN][1000 genomes] |
rs17742106 | 0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes] |
rs1870884 | 0.80[AMR][1000 genomes];0.87[EUR][1000 genomes] |
rs1903680 | 0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes] |
rs1947723 | 0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes] |
rs2047122 | 0.96[ASN][1000 genomes] |
rs2126464 | 0.83[EUR][1000 genomes] |
rs2600805 | 0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes] |
rs28495536 | 0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes] |
rs28883026 | 0.85[AMR][1000 genomes] |
rs2924078 | 0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes] |
rs2924091 | 0.96[ASN][1000 genomes] |
rs2924099 | 0.93[ASN][1000 genomes] |
rs2934591 | 0.96[ASN][1000 genomes] |
rs360175 | 0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes] |
rs360177 | 0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes] |
rs360186 | 0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes] |
rs360188 | 0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes] |
rs360189 | 0.80[ASN][1000 genomes] |
rs360190 | 0.81[ASN][1000 genomes] |
rs360191 | 0.81[ASN][1000 genomes] |
rs435579 | 0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes] |
rs4898554 | 0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes] |
rs4900707 | 0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes] |
rs6572386 | 0.86[EUR][1000 genomes] |
rs7148297 | 0.84[EUR][1000 genomes] |
rs7156338 | 0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes] |
rs7156844 | 0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | esv2751278 | chr14:46718250-47225891 | Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
2 | nsv901862 | chr14:46797353-47083005 | Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
3 | nsv901863 | chr14:46797353-47247399 | Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
4 | esv2829996 | chr14:46799990-47344432 | Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
5 | nsv901870 | chr14:46825242-47125523 | Active TSS Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
6 | nsv1040847 | chr14:46905206-47869359 | Enhancers Flanking Active TSS Active TSS Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
7 | nsv542085 | chr14:46905206-47869359 | ZNF genes & repeats Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
8 | nsv542086 | chr14:46905406-47662394 | Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
9 | nsv1049865 | chr14:46905406-47869220 | Enhancers Bivalent/Poised TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
10 | nsv542087 | chr14:46905406-47869220 | Active TSS Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Strong transcription Bivalent Enhancer Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr14:47039000-47055000 | Weak transcription | Rectal Mucosa Donor 31 | rectum |
2 | chr14:47051400-47053800 | Enhancers | Foreskin Melanocyte Primary Cells skin03 | Skin |
3 | chr14:47051600-47052400 | Enhancers | Primary hematopoietic stem cells G-CSF-mobilized Male | -- |
4 | chr14:47051600-47052600 | Enhancers | Primary hematopoietic stem cells short term culture | blood |