Variant report

Variant	rs2934797
Chromosome Location	chr5:36828519-36828520
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs150501	1.00[AMR][1000 genomes]
rs159435	1.00[AMR][1000 genomes]
rs1669445	1.00[YRI][hapmap];0.90[AFR][1000 genomes]
rs16903458	0.90[AFR][1000 genomes]
rs192668	0.90[AFR][1000 genomes]
rs192669	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2047593	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs289217	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs291113	0.85[AFR][1000 genomes]
rs291115	0.88[AFR][1000 genomes]
rs2914148	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs293755	1.00[AMR][1000 genomes]
rs293756	1.00[YRI][hapmap];0.90[AFR][1000 genomes]
rs293757	0.84[AFR][1000 genomes]
rs293776	0.92[YRI][hapmap];1.00[AMR][1000 genomes]
rs298969	0.90[AFR][1000 genomes]
rs468906	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs531988	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56745362	0.80[AFR][1000 genomes]
rs57317297	0.80[AFR][1000 genomes]
rs60509887	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6891775	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73750903	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73750918	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73750919	1.00[AMR][1000 genomes]
rs73750920	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv492319	chr5:36570707-37061019	Weak transcription Active TSS Flanking Active TSS Strong transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
2	nsv527961	chr5:36781051-36828730	Enhancers Weak transcription Flanking Bivalent TSS/Enh	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv525478	chr5:36804225-37349895	Strong transcription Transcr. at gene 5' and 3' Active TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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