Variant report

Variant	rs2934999
Chromosome Location	chr12:49263808-49263809
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10875883	0.83[CEU][hapmap]
rs11168769	0.82[ASN][1000 genomes]
rs2132202	0.86[ASN][1000 genomes]
rs2446983	0.85[ASN][1000 genomes]
rs2446984	0.84[JPT][hapmap]
rs2446986	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2453474	0.87[ASN][1000 genomes]
rs2926801	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2926805	0.87[ASN][1000 genomes]
rs3104163	0.87[ASN][1000 genomes]
rs3958875	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs833476	0.84[CEU][hapmap];0.80[EUR][1000 genomes]
rs833479	0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv469373	chr12:49256792-49285390	Enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Weak transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region	18 gene(s)	inside rSNPs	diseases
2	nsv558832	chr12:49256792-49285390	Active TSS Flanking Active TSS Bivalent Enhancer Weak transcription Enhancers Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region	18 gene(s)	inside rSNPs	diseases
3	nsv832404	chr12:49258560-49458555	Weak transcription Bivalent/Poised TSS Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	87 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:49259800-49266600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr12:49260200-49265000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
3	chr12:49261800-49271400	Weak transcription	Liver	Liver
4	chr12:49262600-49265200	Weak transcription	K562	blood
5	chr12:49263400-49265000	Weak transcription	HepG2	liver
6	chr12:49263400-49267000	Weak transcription	A549	lung

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links