Variant report

Variant	rs2935008
Chromosome Location	chr12:56844970-56844971
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs2638312	0.82[MKK][hapmap];0.93[YRI][hapmap];1.00[AMR][1000 genomes]
rs774028	0.93[YRI][hapmap]
rs774052	0.93[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1043622	chr12:56571476-56974448	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	95 gene(s)	inside rSNPs	diseases
2	nsv541500	chr12:56571476-56974448	Weak transcription Strong transcription Bivalent/Poised TSS Active TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	95 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:56843600-56845200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
2	chr12:56843600-56845400	Enhancers	Fetal Thymus	thymus
3	chr12:56843600-56852800	Weak transcription	Pancreatic Islets	Pancreatic Islet
4	chr12:56843800-56845000	Enhancers	H1 Cell Line	embryonic stem cell
5	chr12:56843800-56845000	Enhancers	Primary neutrophils fromperipheralblood	blood
6	chr12:56843800-56845200	Enhancers	HUES48 Cell Line	embryonic stem cell
7	chr12:56843800-56845200	Weak transcription	K562	blood
8	chr12:56843800-56845400	Enhancers	iPS-20b Cell Line	embryonic stem cell
9	chr12:56843800-56858000	Weak transcription	Brain Anterior Caudate	brain
10	chr12:56844000-56846200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr12:56844200-56845000	Enhancers	H9 Cell Line	embryonic stem cell
12	chr12:56844200-56845200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
13	chr12:56844600-56845000	Enhancers	Thymus	Thymus
14	chr12:56844600-56846600	Weak transcription	Fetal Muscle Leg	muscle
15	chr12:56844600-56848200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
16	chr12:56844800-56847800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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