Variant report

Variant	rs2936009
Chromosome Location	chr1:213215030-213215031
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs12563331	1.00[CEU][hapmap]
rs2817975	1.00[AMR][1000 genomes]
rs2841432	1.00[AMR][1000 genomes]
rs2841437	1.00[AMR][1000 genomes]
rs3010778	0.91[LWK][hapmap];0.95[MKK][hapmap]
rs3010781	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs3010793	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7540597	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1008594	chr1:213110654-213236750	Weak transcription Flanking Active TSS Active TSS Enhancers Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:213213800-213215600	Enhancers	K562	blood
2	chr1:213214000-213215600	Enhancers	ES-I3 Cell Line	embryonic stem cell
3	chr1:213214000-213215600	Enhancers	ES-WA7 Cell Line	embryonic stem cell
4	chr1:213214000-213215800	Enhancers	HUES48 Cell Line	embryonic stem cell
5	chr1:213214000-213215800	Enhancers	HUES6 Cell Line	embryonic stem cell
6	chr1:213214600-213215400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr1:213214600-213215400	Enhancers	HSMM	muscle
8	chr1:213214600-213215600	Enhancers	iPS-20b Cell Line	embryonic stem cell
9	chr1:213214600-213215600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
10	chr1:213214600-213215600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr1:213214600-213215600	Enhancers	NH-A	brain
12	chr1:213214600-213215600	Enhancers	NHDF-Ad	bronchial
13	chr1:213214600-213215800	Enhancers	iPS-15b Cell Line	embryonic stem cell
14	chr1:213214800-213215400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr1:213214800-213215400	Enhancers	NHLF	lung
16	chr1:213214800-213215600	Enhancers	HUES64 Cell Line	embryonic stem cell
17	chr1:213214800-213215600	Enhancers	iPS-18 Cell Line	embryonic stem cell
18	chr1:213214800-213215600	Enhancers	Primary hematopoietic stem cells short term culture	blood
19	chr1:213214800-213215600	Enhancers	Muscle Satellite Cultured Cells	--

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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