Variant report

Variant	rs293606
Chromosome Location	chr3:59751706-59751707
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 2 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs1683346	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014601	chr3:59666609-59888166	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA miRNA target site	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:59738800-59754400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
2	chr3:59741600-59757800	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr3:59745200-59757000	Weak transcription	Dnd41	blood
4	chr3:59745600-59752200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr3:59746800-59757400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
6	chr3:59747000-59757200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
7	chr3:59747200-59757000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
8	chr3:59748400-59752600	Enhancers	Fetal Muscle Leg	muscle
9	chr3:59748600-59752200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr3:59748800-59752800	Enhancers	NHDF-Ad	bronchial
11	chr3:59749400-59752800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr3:59750200-59756800	Weak transcription	Primary T helper cells fromperipheralblood	blood
13	chr3:59750200-59757600	Weak transcription	Esophagus	oesophagus
14	chr3:59750400-59754600	Weak transcription	Fetal Brain Female	brain
15	chr3:59750400-59755000	Weak transcription	Fetal Thymus	thymus
16	chr3:59750800-59753400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
17	chr3:59750800-59755000	Weak transcription	Fetal Brain Male	brain
18	chr3:59751000-59753400	Enhancers	Fetal Stomach	stomach
19	chr3:59751200-59752600	Enhancers	Osteobl	bone
20	chr3:59751200-59752800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
21	chr3:59751200-59752800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
22	chr3:59751200-59753000	Enhancers	Fetal Lung	lung
23	chr3:59751200-59753400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
24	chr3:59751400-59755000	Weak transcription	Primary T cells from cord blood	blood
25	chr3:59751600-59752400	Enhancers	Adipose Nuclei	Adipose

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