Variant report

Variant	rs2936838
Chromosome Location	chr12:117942834-117942835
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs1068929	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1093288	1.00[AFR][1000 genomes]
rs1093290	1.00[AFR][1000 genomes]
rs1093299	0.86[ASN][1000 genomes]
rs1983042	0.92[ASN][1000 genomes]
rs2944722	0.94[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv560386	chr12:117822187-117991547	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv1045538	chr12:117929400-117963331	Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh	Chromatin interactive region	n/a	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs2936838	SRRM4	cis	parietal	SCAN
rs2936838	NOS1	cis	parietal	SCAN

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:117939800-117951200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
2	chr12:117940200-117945200	Weak transcription	Fetal Lung	lung
3	chr12:117940200-117945200	Weak transcription	Gastric	stomach
4	chr12:117940200-117945200	Weak transcription	Pancreas	Pancrea
5	chr12:117940200-117978600	Weak transcription	Brain Anterior Caudate	brain
6	chr12:117941400-117943200	Weak transcription	Liver	Liver

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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