Variant report

Variant	rs2937738
Chromosome Location	chr5:75633515-75633516
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr5:75633462..75634419-chr5:75839412..75840924,7	MCF-7	breast:
2	chr5:75633439..75636286-chr5:75698439..75700729,3	K562	blood:
3	chr5:75633449..75634035-chr5:75698567..75699502,2	MCF-7	breast:
4	chr5:75633417..75634381-chr5:75839891..75840630,3	MCF-7	breast:
5	chr5:75633387..75634022-chr5:75937052..75937701,2	K562	blood:
6	chr5:75633485..75634409-chr5:75878986..75879511,2	K562	blood:

Variant related genes	Relation type
ENSG00000145703	Chromatin interaction

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs2937740	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1027368	chr5:74759999-75663712	Active TSS Strong transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
2	nsv870415	chr5:75526088-75738412	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv1032033	chr5:75609686-75646482	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv1023310	chr5:75609686-75651786	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	esv3425598	chr5:75610980-75647048	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	esv2757120	chr5:75611597-75642974	Flanking Active TSS Weak transcription ZNF genes & repeats Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
7	esv2759352	chr5:75611597-75642974	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
8	nsv1028669	chr5:75611597-75643598	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
9	nsv1020853	chr5:75611597-75651786	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
10	esv3362900	chr5:75631096-75637594	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:55 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:75622600-75633600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr5:75622800-75634000	Weak transcription	Esophagus	oesophagus
3	chr5:75628200-75633600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
4	chr5:75628200-75633600	Weak transcription	Pancreas	Pancrea
5	chr5:75628200-75633600	Weak transcription	Rectal Mucosa Donor 31	rectum
6	chr5:75628600-75633800	Weak transcription	Liver	Liver
7	chr5:75628800-75633600	Weak transcription	Primary T cells from cord blood	blood
8	chr5:75628800-75633600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr5:75629000-75633600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
10	chr5:75629000-75633600	Weak transcription	H9 Cell Line	embryonic stem cell
11	chr5:75629600-75633600	Weak transcription	Fetal Thymus	thymus
12	chr5:75629600-75637800	Weak transcription	Cortex derived primary cultured neurospheres	brain
13	chr5:75629800-75638000	Weak transcription	HepG2	liver
14	chr5:75631000-75633600	Weak transcription	Fetal Stomach	stomach
15	chr5:75631200-75633600	Weak transcription	K562	blood
16	chr5:75632000-75633800	Weak transcription	Sigmoid Colon	Sigmoid Colon
17	chr5:75632600-75633600	Weak transcription	Right Ventricle	heart
18	chr5:75632600-75634400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
19	chr5:75632800-75634400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
20	chr5:75633000-75633800	Weak transcription	Primary neutrophils fromperipheralblood	blood
21	chr5:75633000-75634400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
22	chr5:75633200-75634200	Enhancers	Primary hematopoietic stem cells short term culture	blood
23	chr5:75633200-75634200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
24	chr5:75633200-75634400	Enhancers	iPS-15b Cell Line	embryonic stem cell
25	chr5:75633200-75634400	Enhancers	Primary hematopoietic stem cells	blood
26	chr5:75633200-75634400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
27	chr5:75633200-75634400	Enhancers	Primary T killer memory cells from peripheral blood	blood
28	chr5:75633400-75633600	Flanking Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
29	chr5:75633400-75633800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
30	chr5:75633400-75633800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
31	chr5:75633400-75634000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
32	chr5:75633400-75634200	Enhancers	H1 Cell Line	embryonic stem cell
33	chr5:75633400-75634200	Enhancers	HUES64 Cell Line	embryonic stem cell
34	chr5:75633400-75634200	Enhancers	iPS-20b Cell Line	embryonic stem cell
35	chr5:75633400-75634200	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
36	chr5:75633400-75634200	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
37	chr5:75633400-75634200	Enhancers	Adipose Nuclei	Adipose
38	chr5:75633400-75634200	Enhancers	Fetal Muscle Leg	muscle
39	chr5:75633400-75634200	Enhancers	Monocytes-CD14+_RO01746	blood
40	chr5:75633400-75634400	Enhancers	ES-WA7 Cell Line	embryonic stem cell
41	chr5:75633400-75634400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
42	chr5:75633400-75634400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
43	chr5:75633400-75634400	Enhancers	iPS-18 Cell Line	embryonic stem cell
44	chr5:75633400-75634400	Enhancers	Primary T helper naive cells from peripheral blood	blood
45	chr5:75633400-75634400	Enhancers	Primary T helper cells PMA-I stimulated	--
46	chr5:75633400-75634400	Enhancers	Primary T helper cells fromperipheralblood	blood
47	chr5:75633400-75634400	Enhancers	Primary T regulatory cells fromperipheralblood	blood
48	chr5:75633400-75634400	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
49	chr5:75633400-75634400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
50	chr5:75633400-75634400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin

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