Variant report

Variant	rs2938111
Chromosome Location	chr7:25593187-25593188
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MYC	chr7:25593157-25593236	MCF10A-Er-Src	breast:	n/a	chr7:25593178-25593187 chr7:25593196-25593207 chr7:25593198-25593205

Variant related genes	Relation type
ENSG00000227386	TF binding region

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv606426	chr7:25254125-25621579	Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv1016813	chr7:25405859-26150509	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	108 gene(s)	inside rSNPs	diseases
3	nsv538803	chr7:25405859-26150509	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	108 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:25579800-25600800	Weak transcription	Lung	lung
2	chr7:25585600-25593200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr7:25589200-25593200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr7:25589400-25593400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr7:25589800-25597200	Weak transcription	Ovary	ovary
6	chr7:25591000-25593600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr7:25592200-25594200	Enhancers	Cortex derived primary cultured neurospheres	brain
8	chr7:25592400-25593200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr7:25592400-25593600	Enhancers	Adipose Nuclei	Adipose
10	chr7:25592400-25594200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr7:25592600-25593800	Enhancers	HUES64 Cell Line	embryonic stem cell
12	chr7:25592600-25594000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
13	chr7:25592800-25593200	Enhancers	ES-WA7 Cell Line	embryonic stem cell
14	chr7:25592800-25594000	Enhancers	H1 Cell Line	embryonic stem cell
15	chr7:25592800-25594000	Enhancers	Brain Germinal Matrix	brain
16	chr7:25593000-25593800	Enhancers	iPS-15b Cell Line	embryonic stem cell
17	chr7:25593000-25594000	Enhancers	HUES48 Cell Line	embryonic stem cell
18	chr7:25593000-25594000	Enhancers	iPS-20b Cell Line	embryonic stem cell
19	chr7:25593000-25594000	Enhancers	Brain Substantia Nigra	brain
20	chr7:25593000-25594200	Enhancers	Fetal Brain Male	brain

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