Variant report

Variant	rs2940060
Chromosome Location	chr1:144533647-144533648
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POU2F2	chr1:144533469-144534682	GM12891	blood:	n/a	chr1:144533949-144533961
2	CEBPB	chr1:144533563-144534396	HepG2	liver:	n/a	n/a
3	POLR2A	chr1:144533514-144534508	HepG2	liver:	n/a	n/a
4	BHLHE40	chr1:144533255-144534490	HepG2	liver:	n/a	n/a
5	CEBPB	chr1:144533478-144534551	K562	blood:	n/a	n/a
6	JUND	chr1:144533572-144534642	A549	lung:	n/a	chr1:144533786-144533795
7	PML	chr1:144532660-144534682	K562	blood:	n/a	chr1:144533439-144533447 chr1:144533223-144533231
8	USF2	chr1:144533173-144534530	H1-hESC	embryonic stem cell:	n/a	n/a
9	SIN3AK20	chr1:144533514-144534300	HepG2	liver:	n/a	n/a
10	SIN3AK20	chr1:144533512-144534547	K562	blood:	n/a	n/a
11	IRF1	chr1:144533181-144534552	K562	blood:	n/a	chr1:144533945-144533959 chr1:144534470-144534486 chr1:144534446-144534462
12	NANOG	chr1:144533605-144534240	H1-hESC	embryonic stem cell:	n/a	n/a
13	MAX	chr1:144533454-144534617	K562	blood:	n/a	chr1:144534327-144534336 chr1:144534325-144534338 chr1:144534326-144534336 chr1:144534326-144534337 chr1:144534328-144534335
14	ELF1	chr1:144533418-144534472	A549	lung:	n/a	chr1:144533884-144533893 chr1:144533883-144533894
15	MAX	chr1:144533192-144534509	A549	lung:	n/a	chr1:144534327-144534336 chr1:144534325-144534338 chr1:144534326-144534336 chr1:144534326-144534337 chr1:144534328-144534335
16	ETS1	chr1:144533540-144534556	GM12878	blood:	n/a	chr1:144533883-144533892 chr1:144533692-144533703 chr1:144533884-144533893 chr1:144533883-144533892 chr1:144533883-144533892 chr1:144533883-144533892 chr1:144533880-144533896 chr1:144533883-144533892 chr1:144533690-144533704 chr1:144533882-144533895 chr1:144533701-144533712 chr1:144533885-144533894 chr1:144533749-144533760 chr1:144533883-144533892 chr1:144533696-144533703 chr1:144533883-144533892
17	TAF7	chr1:144533368-144534582	H1-hESC	embryonic stem cell:	n/a	n/a
18	MAFK	chr1:144533131-144534403	HepG2	liver:	n/a	chr1:144534254-144534265 chr1:144533278-144533298 chr1:144534110-144534125
19	IRF1	chr1:144533543-144534546	K562	blood:	n/a	chr1:144533945-144533959 chr1:144534470-144534486 chr1:144534446-144534462
20	MYC	chr1:144533331-144534547	H1-hESC	embryonic stem cell:	n/a	chr1:144534327-144534336 chr1:144534325-144534338 chr1:144534326-144534336 chr1:144534326-144534337 chr1:144534328-144534335
21	TBP	chr1:144533424-144534446	Hela-S3	cervix:	n/a	n/a
22	POLR2A	chr1:144533585-144534674	HUVEC	blood vessel:	n/a	n/a
23	IRF3	chr1:144533364-144534321	Hela-S3	cervix:	n/a	chr1:144533945-144533959
24	ATF2	chr1:144533212-144534565	H1-hESC	embryonic stem cell:	n/a	n/a
25	MAFF	chr1:144532788-144533662	K562	blood:	n/a	n/a
26	POLR2A	chr1:144533257-144534799	GM12892	blood:	n/a	n/a
27	FOXM1	chr1:144533537-144534603	GM12878	blood:	n/a	n/a
28	POLR2A	chr1:144533610-144534673	GM12891	blood:	n/a	n/a
29	TBP	chr1:144533425-144534549	K562	blood:	n/a	n/a
30	BHLHE40	chr1:144533305-144534550	GM12878	blood:	n/a	n/a
31	IRF4	chr1:144533465-144534580	GM12878	blood:	n/a	n/a
32	CREB1	chr1:144533381-144534491	H1-hESC	embryonic stem cell:	n/a	chr1:144533784-144533797
33	USF1	chr1:144533520-144533945	HepG2	liver:	n/a	n/a
34	POLR2A	chr1:144533389-144534441	H1-neurons	neurons:	n/a	n/a
35	TAF1	chr1:144533393-144534423	ECC-1	luminal epithelium:	n/a	n/a
36	EP300	chr1:144532981-144534534	K562	blood:	n/a	chr1:144533703-144533719 chr1:144533939-144533955 chr1:144533884-144533891
37	SREBP1	chr1:144533527-144534233	HepG2	liver:	n/a	n/a
38	CTCF	chr1:144533460-144533830	K562	blood:	n/a	n/a
39	GATA2	chr1:144532178-144534513	SH-SY5Y	brain:	n/a	chr1:144533795-144533803 chr1:144533694-144533704
40	RAD21	chr1:144533442-144534453	H1-hESC	embryonic stem cell:	n/a	n/a
41	BCLAF1	chr1:144533644-144534620	GM12878	blood:	n/a	chr1:144533775-144533783
42	TEAD4	chr1:144533377-144534567	ECC-1	luminal epithelium:	n/a	n/a
43	PAX5	chr1:144533323-144534560	GM12878	blood:	n/a	chr1:144533695-144533704 chr1:144534290-144534299
44	CREB1	chr1:144533472-144534467	H1-hESC	embryonic stem cell:	n/a	chr1:144533784-144533797
45	YY1	chr1:144533438-144534454	K562	blood:	n/a	chr1:144533946-144533955
46	TAF1	chr1:144533169-144534540	H1-hESC	embryonic stem cell:	n/a	n/a
47	CEBPB	chr1:144533319-144534472	A549	lung:	n/a	n/a
48	POLR2A	chr1:144533482-144534782	GM12892	blood:	n/a	n/a
49	POLR2A	chr1:144533485-144534461	NB4	blood:	n/a	n/a
50	TCF12	chr1:144533331-144534584	ECC-1	luminal epithelium:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr1:144533591..144534251-chr22:39915621..39916126,2	Hela-S3	cervix:
2	chr1:144533558..144534385-chr14:50778724..50779632,2	Hela-S3	cervix:
3	chr1:144533458..144534448-chr1:149194159..149194696,17	HCT-116	colon:
4	chr1:144533633..144534543-chr10:3826897..3827887,2	Hela-S3	cervix:
5	chr1:144533626..144534443-chr22:40440110..40440823,3	Hela-S3	cervix:
6	chr1:144532556..144534353-chr1:147805518..147808374,3	K562	blood:
7	chr1:144526974..144536279-chr1:149221211..149226185,98	K562	blood:
8	chr1:144533543..144534245-chr3:186287654..186288161,2	Hela-S3	cervix:
9	chr1:144533498..144535527-chr14:56140284..56141806,2	K562	blood:
10	chr1:144530771..144535863-chr1:144988447..145007040,21	K562	blood:
11	chr1:144533626..144534268-chr10:74856178..74856917,2	Hela-S3	cervix:
12	chr1:144533574..144534118-chr13:52027490..52028216,2	Hela-S3	cervix:
13	chr1:144533541..144534095-chr18:3602938..3603592,2	Hela-S3	cervix:
14	chr1:144533383..144534119-chr7:45026059..45026652,2	Hela-S3	cervix:
15	chr1:45187271..45188987-chr1:144532926..144535604,2	K562	blood:
16	chr1:144533645..144534350-chr1:149215075..149215829,2	HCT-116	colon:
17	chr1:8938189..8938751-chr1:144533626..144534203,2	Hela-S3	cervix:
18	chr1:144533638..144534730-chr2:88315452..88316503,4	Hela-S3	cervix:
19	chr1:144533567..144534586-chr1:184377390..184378390,5	HCT-116	colon:
20	chr1:144533511..144534156-chr5:175815538..175816077,2	Hela-S3	cervix:
21	chr1:144533606..144534311-chr10:112631501..112632009,2	Hela-S3	cervix:
22	chr1:144533640..144534142-chr11:64901928..64902515,2	Hela-S3	cervix:
23	chr1:144533647..144534246-chr11:63953498..63954179,2	Hela-S3	cervix:
24	chr1:144532709..144537146-chr1:146553385..146558827,17	K562	blood:
25	chr1:144533622..144534350-chr12:51476813..51477576,2	Hela-S3	cervix:
26	chr1:144533640..144534222-chr5:180649728..180650375,2	Hela-S3	cervix:
27	chr1:144527325..144537192-chr1:149221188..149227183,106	K562	blood:
28	chr1:144532662..144534458-chr1:147992705..147994526,2	K562	blood:
29	chr1:144533568..144534348-chr13:48611630..48612402,3	Hela-S3	cervix:
30	chr1:144532854..144535765-chr1:148603401..148605214,4	K562	blood:
31	chr1:144529973..144534952-chr1:149221200..149225268,6	MCF-7	breast:
32	chr1:17221575..17223414-chr1:144532305..144534142,2	K562	blood:
33	chr1:144526732..144539178-chr1:149221186..149225476,28	MCF-7	breast:
34	chr1:120428374..120430929-chr1:144532739..144535945,3	K562	blood:
35	chr1:17229738..17236634-chr1:144531729..144537089,21	K562	blood:
36	chr1:144532329..144535680-chr1:145012343..145016063,5	K562	blood:
37	chr1:144533449..144534234-chr6:16128957..16129770,2	NB4	blood:
38	chr1:144533626..144534143-chr6:31165207..31165768,2	Hela-S3	cervix:
39	chr1:144531776..144534178-chr1:145095593..145097406,2	K562	blood:
40	chr1:144533513..144534190-chr17:8093096..8093745,2	Hela-S3	cervix:
41	chr1:144532746..144535679-chr1:148240132..148243070,2	K562	blood:
42	chr1:144533564..144534379-chr17:56065165..56066091,2	HCT-116	colon:
43	chr1:144531278..144537146-chr1:146553717..146557612,11	K562	blood:
44	chr1:144533619..144534549-chr2:20101329..20102307,3	Hela-S3	cervix:
45	chr1:144532673..144535225-chr1:149604575..149607265,3	K562	blood:
46	chr1:144533638..144534274-chr19:15217961..15218528,2	Hela-S3	cervix:
47	chr1:144532778..144535743-chr1:145042899..145044977,2	K562	blood:
48	chr1:144533622..144534372-chr16:1877019..1877569,2	Hela-S3	cervix:
49	chr1:21113288..21114044-chr1:144533309..144534299,4	Hela-S3	cervix:
50	chr1:144532605..144534445-chr1:149782477..149783992,2	K562	blood:

Variant related genes	Relation type
RNU1-59P	TF binding region
ENSG00000207205	Chromatin interaction
ENSG00000178104	Chromatin interaction
ENSG00000113838	Chromatin interaction
ENSG00000207501	Chromatin interaction
ENSG00000100354	Chromatin interaction
ENSG00000128272	Chromatin interaction
ENSG00000120738	Chromatin interaction
ENSG00000105137	Chromatin interaction
ENSG00000207349	Chromatin interaction
ENSG00000204856	Chromatin interaction
ENSG00000108588	Chromatin interaction
ENSG00000110925	Chromatin interaction
ENSG00000261202	Chromatin interaction
ENSG00000100554	Chromatin interaction
ENSG00000063854	Chromatin interaction
ENSG00000249492	Chromatin interaction
ENSG00000146066	Chromatin interaction
ENSG00000257548	Chromatin interaction
ENSG00000168439	Chromatin interaction
ENSG00000222724	Chromatin interaction
ENSG00000267751	Chromatin interaction
ENSG00000233396	Chromatin interaction
ENSG00000113387	Chromatin interaction
ENSG00000232151	Chromatin interaction
ENSG00000007944	Chromatin interaction
ENSG00000048162	Chromatin interaction
ENSG00000268172	Chromatin interaction
ENSG00000146063	Chromatin interaction
ENSG00000230832	Chromatin interaction
ENSG00000184270	Chromatin interaction
ENSG00000067082	Chromatin interaction
ENSG00000122884	Chromatin interaction
ENSG00000167280	Chromatin interaction
ENSG00000134001	Chromatin interaction
ENSG00000136159	Chromatin interaction
ENSG00000183891	Chromatin interaction
ENSG00000252826	Chromatin interaction
ENSG00000140403	Chromatin interaction
ENSG00000139722	Chromatin interaction
ENSG00000127483	Chromatin interaction
ENSG00000272426	Chromatin interaction
ENSG00000270141	Chromatin interaction
ENSG00000136143	Chromatin interaction
ENSG00000207005	Chromatin interaction
ENSG00000178096	Chromatin interaction
ENSG00000262001	Chromatin interaction
ENSG00000172270	Chromatin interaction
ENSG00000236943	Chromatin interaction
ENSG00000143401	Chromatin interaction
ENSG00000202496	Chromatin interaction
ENSG00000074800	Chromatin interaction
ENSG00000271991	Chromatin interaction
ENSG00000116830	Chromatin interaction
ENSG00000203814	Chromatin interaction
ENSG00000102786	Chromatin interaction
ENSG00000162298	Chromatin interaction
ENSG00000232956	Chromatin interaction
ENSG00000212456	Chromatin interaction
ENSG00000243452	Chromatin interaction
ENSG00000151881	Chromatin interaction
ENSG00000126777	Chromatin interaction
ENSG00000125375	Chromatin interaction
ENSG00000230470	Chromatin interaction
ENSG00000206737	Chromatin interaction
ENSG00000185024	Chromatin interaction
ENSG00000198231	Chromatin interaction
ENSG00000150593	Chromatin interaction
ENSG00000252656	Chromatin interaction
ENSG00000203497	Chromatin interaction
ENSG00000111231	Chromatin interaction
ENSG00000242663	Chromatin interaction
ENSG00000268032	Chromatin interaction
ENSG00000223380	Chromatin interaction
ENSG00000183598	Chromatin interaction
ENSG00000166439	Chromatin interaction
ENSG00000201558	Chromatin interaction
ENSG00000136451	Chromatin interaction
ENSG00000206344	Chromatin interaction
ENSG00000100227	Chromatin interaction
ENSG00000184260	Chromatin interaction
ENSG00000269501	Chromatin interaction
ENSG00000270022	Chromatin interaction
ENSG00000259708	Chromatin interaction
ENSG00000116863	Chromatin interaction
ENSG00000245904	Chromatin interaction
ENSG00000251562	Chromatin interaction
ENSG00000008405	Chromatin interaction
ENSG00000168010	Chromatin interaction
ENSG00000177666	Chromatin interaction
ENSG00000087299	Chromatin interaction
ENSG00000159208	Chromatin interaction
ENSG00000236778	Chromatin interaction
ENSG00000133639	Chromatin interaction
ENSG00000196544	Chromatin interaction
ENSG00000226446	Chromatin interaction
ENSG00000180185	Chromatin interaction
ENSG00000202408	Chromatin interaction
ENSG00000026025	Chromatin interaction
ENSG00000199377	Chromatin interaction

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10737112	1.00[AMR][1000 genomes]
rs17161431	0.91[AMR][1000 genomes]
rs2455992	1.00[AMR][1000 genomes]
rs2655793	0.83[AMR][1000 genomes]
rs2655794	0.91[AMR][1000 genomes]
rs28663124	0.83[AMR][1000 genomes]
rs2938632	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:25 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1003583	chr1:144007818-144543442	Bivalent Enhancer Weak transcription Genic enhancers Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	257 gene(s)	inside rSNPs	diseases
2	nsv1002681	chr1:144007818-144560590	Genic enhancers Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	257 gene(s)	inside rSNPs	diseases
3	nsv1012104	chr1:144007818-144682096	Weak transcription Strong transcription Enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	260 gene(s)	inside rSNPs	diseases
4	nsv1006330	chr1:144007818-144849544	Active TSS Strong transcription Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	262 gene(s)	inside rSNPs	diseases
5	nsv1001989	chr1:144007818-144873327	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	265 gene(s)	inside rSNPs	diseases
6	nsv997949	chr1:144007818-144876884	Bivalent/Poised TSS Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	265 gene(s)	inside rSNPs	diseases
7	nsv1010670	chr1:144007818-144880405	Flanking Bivalent TSS/Enh Enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Weak transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	265 gene(s)	inside rSNPs	diseases
8	nsv1010163	chr1:144007818-144884322	Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Bivalent/Poised TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	265 gene(s)	inside rSNPs	diseases
9	nsv1014985	chr1:144007818-144949963	Enhancers Weak transcription Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	283 gene(s)	inside rSNPs	diseases
10	nsv1002373	chr1:144013582-144682096	Bivalent/Poised TSS Weak transcription Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	258 gene(s)	inside rSNPs	diseases
11	nsv1007748	chr1:144015838-144682096	Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	258 gene(s)	inside rSNPs	diseases
12	nsv997876	chr1:144033939-144538748	Enhancers Flanking Active TSS Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	255 gene(s)	inside rSNPs	diseases
13	nsv524682	chr1:144034888-144617179	Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	257 gene(s)	inside rSNPs	diseases
14	nsv1007246	chr1:144036737-144560590	Weak transcription Bivalent Enhancer Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	255 gene(s)	inside rSNPs	diseases
15	nsv1006612	chr1:144050098-144560590	Transcr. at gene 5' and 3' Enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	254 gene(s)	inside rSNPs	diseases
16	esv1828275	chr1:144274482-145098718	Enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	304 gene(s)	inside rSNPs	diseases
17	esv2512286	chr1:144321887-144560360	Flanking Active TSS Enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	251 gene(s)	inside rSNPs	diseases
18	nsv1014641	chr1:144337917-144880405	Weak transcription Strong transcription Enhancers Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	259 gene(s)	inside rSNPs	diseases
19	nsv998833	chr1:144337917-144885032	Strong transcription ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	259 gene(s)	inside rSNPs	diseases
20	nsv1009682	chr1:144471974-144876884	Strong transcription Enhancers Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	255 gene(s)	inside rSNPs	diseases
21	nsv1008142	chr1:144471974-144880405	Weak transcription Strong transcription Active TSS Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	255 gene(s)	inside rSNPs	diseases
22	nsv1001693	chr1:144471974-145290292	Enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Weak transcription Genic enhancers Flanking Active TSS Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	311 gene(s)	inside rSNPs	diseases
23	nsv831292	chr1:144506093-144613511	Weak transcription Active TSS Strong transcription Genic enhancers Bivalent Enhancer Flanking Active TSS Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	248 gene(s)	inside rSNPs	diseases
24	nsv831303	chr1:144523643-144617215	Enhancers Active TSS Flanking Active TSS Weak transcription Bivalent Enhancer Genic enhancers Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	248 gene(s)	inside rSNPs	diseases
25	nsv946237	chr1:144533425-144535801	Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent Enhancer Enhancers Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	246 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:144528800-144533800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr1:144529400-144533800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr1:144532800-144533800	Flanking Active TSS	K562	blood
4	chr1:144532800-144534400	ZNF genes & repeats	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr1:144532800-144534600	ZNF genes & repeats	Spleen	Spleen
6	chr1:144532800-144534800	ZNF genes & repeats	Right Atrium	heart
7	chr1:144533000-144534200	Bivalent/Poised TSS	Rectal Smooth Muscle	rectum
8	chr1:144533000-144534400	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr1:144533200-144533800	Flanking Active TSS	Primary T helper memory cells from peripheral blood 1	blood
10	chr1:144533200-144533800	Flanking Bivalent TSS/Enh	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr1:144533200-144533800	Flanking Active TSS	Fetal Brain Female	brain
12	chr1:144533200-144533800	Flanking Bivalent TSS/Enh	Fetal Stomach	stomach
13	chr1:144533200-144534000	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr1:144533200-144534000	Flanking Bivalent TSS/Enh	Foreskin Keratinocyte Primary Cells skin02	Skin
15	chr1:144533200-144534000	Flanking Bivalent TSS/Enh	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr1:144533200-144534000	Bivalent/Poised TSS	Brain Cingulate Gyrus	brain
17	chr1:144533200-144534200	Flanking Bivalent TSS/Enh	Skeletal Muscle Male	skeletal muscle
18	chr1:144533200-144534200	Flanking Active TSS	HMEC	breast
19	chr1:144533200-144534200	Bivalent/Poised TSS	Osteobl	bone
20	chr1:144533200-144534400	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells	blood
21	chr1:144533200-144534400	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
22	chr1:144533200-144534400	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
23	chr1:144533200-144534400	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
24	chr1:144533200-144534400	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Female	--
25	chr1:144533200-144534400	Flanking Bivalent TSS/Enh	Cortex derived primary cultured neurospheres	brain
26	chr1:144533200-144534400	Flanking Bivalent TSS/Enh	Ganglion Eminence derived primary cultured neurospheres	brain
27	chr1:144533200-144534400	Flanking Bivalent TSS/Enh	Fetal Adrenal Gland	Adrenal Gland
28	chr1:144533200-144534400	Active TSS	Right Ventricle	heart
29	chr1:144533200-144534400	Flanking Bivalent TSS/Enh	Skeletal Muscle Female	skeletal muscle
30	chr1:144533200-144534400	Flanking Bivalent TSS/Enh	Stomach Smooth Muscle	stomach
31	chr1:144533200-144534400	Flanking Bivalent TSS/Enh	NHEK	skin
32	chr1:144533200-144534600	Flanking Bivalent TSS/Enh	H9 Derived Neuron Cultured Cells	ES cell derived
33	chr1:144533200-144534600	ZNF genes & repeats	IMR90 fetal lung fibroblasts Cell Line	lung
34	chr1:144533200-144534600	Flanking Bivalent TSS/Enh	HepG2	liver
35	chr1:144533200-144534600	ZNF genes & repeats	HSMMtube	muscle
36	chr1:144533400-144533800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
37	chr1:144533400-144533800	Flanking Bivalent TSS/Enh	Adipose Nuclei	Adipose
38	chr1:144533400-144533800	Active TSS	Brain Inferior Temporal Lobe	brain
39	chr1:144533400-144533800	Bivalent/Poised TSS	Colonic Mucosa	Colon
40	chr1:144533400-144533800	Flanking Bivalent TSS/Enh	Fetal Brain Male	brain
41	chr1:144533400-144533800	Bivalent/Poised TSS	Pancreatic Islets	Pancreatic Islet
42	chr1:144533400-144533800	Bivalent Enhancer	Stomach Mucosa	stomach
43	chr1:144533400-144533800	Flanking Active TSS	GM12878-XiMat	blood
44	chr1:144533400-144533800	Flanking Bivalent TSS/Enh	NHDF-Ad	bronchial
45	chr1:144533400-144534000	Active TSS	ES-WA7 Cell Line	embryonic stem cell
46	chr1:144533400-144534000	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells short term culture	blood
47	chr1:144533400-144534000	Flanking Bivalent TSS/Enh	Foreskin Melanocyte Primary Cells skin01	Skin
48	chr1:144533400-144534000	Active TSS	Brain Hippocampus Middle	brain
49	chr1:144533400-144534000	ZNF genes & repeats	Ovary	ovary
50	chr1:144533400-144534200	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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