Variant report

Variant	rs2943664
Chromosome Location	chr1:85075487-85075488
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs11807687	1.00[EUR][1000 genomes]
rs1849880	0.95[EUR][1000 genomes]
rs1891126	0.95[EUR][1000 genomes]
rs2911600	0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2911602	0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2911606	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2945138	0.95[EUR][1000 genomes]
rs3768247	0.89[EUR][1000 genomes]
rs6658974	0.89[EUR][1000 genomes]
rs6668752	0.89[EUR][1000 genomes]
rs72950388	0.95[EUR][1000 genomes]
rs7340034	0.95[EUR][1000 genomes]
rs7515928	0.95[EUR][1000 genomes]
rs7525512	0.95[EUR][1000 genomes]
rs7541909	0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1000325	chr1:85032605-85100748	Active TSS Strong transcription Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
2	esv3364770	chr1:85069339-85078334	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:85069600-85077400	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr1:85070200-85077400	Weak transcription	Fetal Heart	heart
3	chr1:85070400-85079600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr1:85070400-85085200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr1:85071200-85077200	Weak transcription	Stomach Smooth Muscle	stomach
6	chr1:85071600-85077600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr1:85071600-85085000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
8	chr1:85071800-85079800	Weak transcription	Pancreas	Pancrea
9	chr1:85071800-85084800	Weak transcription	Brain Hippocampus Middle	brain
10	chr1:85072000-85077200	Weak transcription	Brain Substantia Nigra	brain
11	chr1:85075400-85076800	Weak transcription	Colon Smooth Muscle	Colon

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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