Variant report

Variant	rs2945151
Chromosome Location	chr1:85071430-85071431
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs2911601	1.00[AFR][1000 genomes]
rs2945139	1.00[AFR][1000 genomes]
rs2945144	1.00[AFR][1000 genomes]
rs2994936	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1000325	chr1:85032605-85100748	Active TSS Strong transcription Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
2	esv3364770	chr1:85069339-85078334	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:85069600-85077400	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr1:85070200-85072000	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr1:85070200-85077400	Weak transcription	Fetal Heart	heart
4	chr1:85070400-85071600	ZNF genes & repeats	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr1:85070400-85072000	ZNF genes & repeats	Liver	Liver
6	chr1:85070400-85079600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr1:85070400-85085200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
8	chr1:85070600-85071600	ZNF genes & repeats	Brain Dorsolateral Prefrontal Cortex	brain
9	chr1:85070600-85071800	ZNF genes & repeats	Brain Hippocampus Middle	brain
10	chr1:85070800-85072000	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
11	chr1:85071000-85071800	ZNF genes & repeats	Pancreas	Pancrea
12	chr1:85071000-85072000	ZNF genes & repeats	Brain Substantia Nigra	brain
13	chr1:85071200-85072400	Weak transcription	Colon Smooth Muscle	Colon
14	chr1:85071200-85077200	Weak transcription	Stomach Smooth Muscle	stomach

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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