Variant report

Variant	rs294782
Chromosome Location	chr3:22883035-22883036
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs167166	0.98[ASN][1000 genomes]
rs211894	0.85[ASN][1000 genomes]
rs294785	0.98[ASN][1000 genomes]
rs294786	0.96[ASN][1000 genomes]
rs294787	0.96[ASN][1000 genomes]
rs296168	0.85[ASN][1000 genomes]
rs494778	0.94[ASN][1000 genomes]
rs497546	0.89[ASN][1000 genomes]
rs498004	0.85[ASN][1000 genomes]
rs507923	0.93[ASN][1000 genomes]
rs552225	0.84[ASN][1000 genomes]
rs568113	0.96[ASN][1000 genomes]
rs573943	0.93[ASN][1000 genomes]
rs596197	0.94[ASN][1000 genomes]
rs610895	0.85[ASN][1000 genomes]
rs617282	0.94[ASN][1000 genomes]
rs640856	0.91[ASN][1000 genomes]
rs687370	0.95[ASN][1000 genomes]
rs7637224	0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv460477	chr3:22532660-22920246	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv589941	chr3:22532660-22920246	Enhancers ZNF genes & repeats Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv1014828	chr3:22554271-23033498	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv1008306	chr3:22762892-23026548	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs294782	RPL15	cis	cerebellum	SCAN

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:22880000-22883200	Weak transcription	Aorta	Aorta

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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