Variant report

Variant	rs294800
Chromosome Location	chr9:10209066-10209067
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10958962	0.82[JPT][hapmap]
rs12000398	0.93[CEU][hapmap];0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12002573	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12002909	0.94[CEU][hapmap]
rs1322133	0.82[JPT][hapmap]
rs1323504	0.89[CEU][hapmap]
rs1323505	0.89[CEU][hapmap]
rs13285525	0.94[CEU][hapmap]
rs13294419	0.82[CEU][hapmap];0.82[JPT][hapmap]
rs13294570	0.83[CEU][hapmap];0.82[JPT][hapmap]
rs16925548	0.97[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs16925554	1.00[CEU][hapmap];0.82[JPT][hapmap];0.97[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs294798	1.00[CEU][hapmap]
rs62538585	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62538586	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62538655	0.97[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs62538656	0.97[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs62539661	0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs62539665	0.82[EUR][1000 genomes]
rs62539729	0.81[EUR][1000 genomes]
rs7025015	0.93[CEU][hapmap];0.82[EUR][1000 genomes]
rs7033591	0.97[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7851534	0.88[CEU][hapmap]
rs7862003	0.89[CEU][hapmap]
rs911692	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs911693	1.00[CEU][hapmap];0.82[JPT][hapmap]
rs968953	0.88[CEU][hapmap];1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1034731	chr9:9776126-10481262	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv892295	chr9:9832245-10380406	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv1030657	chr9:10002355-10481262	Weak transcription Active TSS Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv1024401	chr9:10105656-10218577	Weak transcription Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv539995	chr9:10105656-10218577	Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv1033178	chr9:10169848-10428731	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv471280	chr9:10172572-10277602	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
8	nsv466158	chr9:10172573-10277602	Active TSS Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	n/a	inside rSNPs	diseases
9	nsv613375	chr9:10172573-10277602	Enhancers ZNF genes & repeats Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	n/a	inside rSNPs	diseases
10	esv2758179	chr9:10188450-10370398	Enhancers Active TSS Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
11	esv2759666	chr9:10188450-10370398	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
12	nsv892310	chr9:10197122-10279606	Enhancers Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
13	nsv416854	chr9:10202700-10210812	Enhancers Active TSS Flanking Active TSS Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:10207800-10209200	Active TSS	ES-I3 Cell Line	embryonic stem cell
2	chr9:10207800-10209200	Active TSS	Pancreatic Islets	Pancreatic Islet
3	chr9:10208000-10209200	Active TSS	Brain Anterior Caudate	brain
4	chr9:10208800-10209200	Flanking Active TSS	GM12878-XiMat	blood
5	chr9:10208800-10209600	Enhancers	Primary B cells from peripheral blood	blood
6	chr9:10209000-10209600	Enhancers	Primary B cells from cord blood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links