Variant report

Variant	rs2948119
Chromosome Location	chr12:121705005-121705006
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs11065513	0.80[ASN][1000 genomes]
rs1151885	0.99[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12582752	0.80[ASN][1000 genomes]
rs12582753	0.80[ASN][1000 genomes]
rs1653606	0.99[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1718120	0.99[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1718123	0.98[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2230776	0.80[ASN][1000 genomes]
rs2668254	0.98[AMR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2686347	0.99[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3817190	0.84[ASN][1000 genomes]
rs4474520	0.94[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4474521	0.94[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4474522	0.90[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs4480616	0.91[ASN][1000 genomes]
rs61953430	0.90[ASN][1000 genomes]
rs6489803	0.84[ASN][1000 genomes]
rs6489804	0.90[ASN][1000 genomes]
rs9805130	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv521928	chr12:121041728-121761800	Genic enhancers Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Enhancers Strong transcription ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	68 gene(s)	inside rSNPs	diseases
2	nsv560454	chr12:121457073-121745742	Strong transcription Enhancers Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
3	nsv1054878	chr12:121519880-121761800	Flanking Active TSS Genic enhancers Strong transcription Weak transcription Enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
4	nsv455729	chr12:121525591-121761800	Enhancers Strong transcription Genic enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
5	nsv560455	chr12:121525591-121761800	Weak transcription Strong transcription Enhancers Genic enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
6	nsv1050519	chr12:121552964-121756420	Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
7	nsv1048801	chr12:121695522-121761800	Flanking Active TSS Strong transcription Weak transcription Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:121677400-121717000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr12:121677400-121717200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr12:121679000-121713000	Strong transcription	Fetal Intestine Large	intestine
4	chr12:121679200-121709200	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr12:121679200-121714400	Weak transcription	Right Atrium	heart
6	chr12:121679400-121713800	Strong transcription	Primary neutrophils fromperipheralblood	blood
7	chr12:121679600-121708800	Strong transcription	Fetal Muscle Leg	muscle
8	chr12:121679600-121709200	Strong transcription	Stomach Smooth Muscle	stomach
9	chr12:121679600-121713000	Strong transcription	Liver	Liver
10	chr12:121679600-121732600	Strong transcription	Fetal Intestine Small	intestine
11	chr12:121679800-121709000	Strong transcription	Fetal Muscle Trunk	muscle
12	chr12:121679800-121713000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
13	chr12:121679800-121713600	Strong transcription	Monocytes-CD14+_RO01746	blood
14	chr12:121680000-121709800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
15	chr12:121680800-121713800	Strong transcription	Primary monocytes fromperipheralblood	blood
16	chr12:121681000-121709000	Strong transcription	Adipose Nuclei	Adipose
17	chr12:121681000-121712600	Strong transcription	Duodenum Mucosa	Duodenum
18	chr12:121681200-121706400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
19	chr12:121681200-121708800	Strong transcription	HUES6 Cell Line	embryonic stem cell
20	chr12:121681200-121708800	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
21	chr12:121681200-121708800	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
22	chr12:121681200-121713600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
23	chr12:121681200-121717800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
24	chr12:121681400-121708800	Strong transcription	Sigmoid Colon	Sigmoid Colon
25	chr12:121684800-121711800	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
26	chr12:121685200-121712400	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
27	chr12:121686200-121707400	Strong transcription	Rectal Mucosa Donor 31	rectum
28	chr12:121688400-121733000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
29	chr12:121689000-121713000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
30	chr12:121689200-121717000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
31	chr12:121690800-121714200	Strong transcription	Fetal Stomach	stomach
32	chr12:121691000-121706400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
33	chr12:121691200-121716400	Weak transcription	Psoas Muscle	Psoas
34	chr12:121691400-121708600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
35	chr12:121691400-121709200	Strong transcription	Fetal Thymus	thymus
36	chr12:121691600-121706200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
37	chr12:121691600-121708000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
38	chr12:121691800-121705600	Weak transcription	NH-A	brain
39	chr12:121692800-121705200	Weak transcription	Fetal Kidney	kidney
40	chr12:121694200-121708600	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
41	chr12:121695400-121707400	Strong transcription	Gastric	stomach
42	chr12:121695400-121709000	Strong transcription	Lung	lung
43	chr12:121695400-121712600	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
44	chr12:121696000-121708000	Strong transcription	Brain Inferior Temporal Lobe	brain
45	chr12:121696000-121712000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
46	chr12:121696000-121712600	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
47	chr12:121696200-121709000	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
48	chr12:121696400-121708800	Strong transcription	Duodenum Smooth Muscle	Duodenum
49	chr12:121696400-121714600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
50	chr12:121696600-121712600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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