Variant report

Variant	rs2949650
Chromosome Location	chr4:107286050-107286051
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10000428	0.83[CEU][hapmap]
rs10004611	0.83[CEU][hapmap]
rs11732791	0.92[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11931386	0.92[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12642691	0.84[CEU][hapmap];0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12650692	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs13101612	0.84[CEU][hapmap];0.84[EUR][1000 genomes]
rs13113845	0.83[CEU][hapmap];0.92[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs13114479	0.83[CEU][hapmap];0.92[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs13121614	0.84[CEU][hapmap];0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs13138528	0.84[CEU][hapmap];0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2691804	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2949625	0.98[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs3018066	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3018069	0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3109953	0.84[CEU][hapmap];0.98[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs3109955	0.84[CEU][hapmap];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs3109958	0.84[CEU][hapmap];0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs3109960	0.84[CEU][hapmap];0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs3113249	0.84[CEU][hapmap];0.92[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs3113250	0.87[CEU][hapmap];0.90[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs3113252	0.84[CEU][hapmap];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs3133168	0.83[CEU][hapmap];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs3133169	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4374692	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4382109	0.84[CEU][hapmap]
rs4569824	0.84[CEU][hapmap];0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6533242	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs6819081	0.84[CEU][hapmap];0.84[EUR][1000 genomes]
rs7356287	0.84[CEU][hapmap];0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7668276	0.84[CEU][hapmap];0.92[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7673101	0.84[CEU][hapmap]
rs7682646	0.84[CEU][hapmap];0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7693448	0.92[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9996093	0.83[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830029	chr4:107203096-107353483	Weak transcription Flanking Active TSS Enhancers Strong transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv1008963	chr4:107282656-107384924	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:107270600-107286200	Weak transcription	HepG2	liver
2	chr4:107270800-107290600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
3	chr4:107271200-107286400	Weak transcription	Fetal Intestine Large	intestine
4	chr4:107273000-107286600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr4:107273000-107286600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr4:107280400-107286400	Weak transcription	Monocytes-CD14+_RO01746	blood
7	chr4:107280800-107286200	Weak transcription	NH-A	brain
8	chr4:107281000-107286200	Weak transcription	Muscle Satellite Cultured Cells	--
9	chr4:107283800-107286600	Weak transcription	Primary monocytes fromperipheralblood	blood
10	chr4:107285200-107288600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr4:107285400-107286600	Enhancers	NHDF-Ad	bronchial
12	chr4:107285400-107287800	Enhancers	NHLF	lung
13	chr4:107285400-107287800	Enhancers	Osteobl	bone
14	chr4:107285400-107288400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr4:107285400-107288400	Enhancers	HSMM	muscle
16	chr4:107285600-107287600	Enhancers	HSMMtube	muscle
17	chr4:107285600-107287800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
18	chr4:107285800-107286600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr4:107285800-107286800	Weak transcription	Colon Smooth Muscle	Colon
20	chr4:107285800-107287000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
21	chr4:107285800-107287000	Weak transcription	Psoas Muscle	Psoas
22	chr4:107285800-107288200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
23	chr4:107286000-107287000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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