Variant report

Variant	rs2951905
Chromosome Location	chr15:57337932-57337933
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:57331807..57334195-chr15:57336717..57338701,2	K562	blood:
2	chr15:57333982..57335700-chr15:57337723..57339646,2	K562	blood:

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs2439917	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2470085	0.84[AMR][1000 genomes]
rs2951907	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2962988	0.81[AMR][1000 genomes]
rs55910715	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs72751006	0.87[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs72751008	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs72751021	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs8037322	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1042486	chr15:57094598-57505992	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
2	nsv542393	chr15:57115116-57341363	Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
3	nsv1052052	chr15:57232111-57344561	Weak transcription Enhancers Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
4	nsv542394	chr15:57232111-57344561	Enhancers Weak transcription Genic enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
5	nsv904251	chr15:57241970-57575916	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:71 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:57311000-57347000	Weak transcription	Fetal Intestine Large	intestine
2	chr15:57316400-57345400	Weak transcription	Fetal Intestine Small	intestine
3	chr15:57324200-57339000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
4	chr15:57324200-57341200	Weak transcription	Fetal Stomach	stomach
5	chr15:57324400-57338000	Weak transcription	HSMM	muscle
6	chr15:57324400-57341200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr15:57324400-57349200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr15:57324600-57355800	Weak transcription	Primary B cells from cord blood	blood
9	chr15:57324600-57398600	Weak transcription	Fetal Muscle Leg	muscle
10	chr15:57324800-57347200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr15:57324800-57349400	Weak transcription	Right Ventricle	heart
12	chr15:57326400-57341000	Weak transcription	Muscle Satellite Cultured Cells	--
13	chr15:57328200-57353600	Weak transcription	Pancreas	Pancrea
14	chr15:57328400-57341200	Weak transcription	Ovary	ovary
15	chr15:57328400-57343800	Weak transcription	Small Intestine	intestine
16	chr15:57328400-57345800	Weak transcription	Left Ventricle	heart
17	chr15:57328600-57355000	Weak transcription	Dnd41	blood
18	chr15:57329800-57349600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
19	chr15:57329800-57351400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
20	chr15:57330400-57343400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
21	chr15:57331800-57338200	Enhancers	Brain Cingulate Gyrus	brain
22	chr15:57331800-57341200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
23	chr15:57332000-57345200	Weak transcription	HepG2	liver
24	chr15:57332000-57346000	Weak transcription	Primary hematopoietic stem cells	blood
25	chr15:57332000-57349200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
26	chr15:57332000-57349400	Weak transcription	Thymus	Thymus
27	chr15:57332000-57355800	Weak transcription	Primary B cells from peripheral blood	blood
28	chr15:57332800-57343800	Weak transcription	Skeletal Muscle Male	skeletal muscle
29	chr15:57332800-57345800	Weak transcription	Sigmoid Colon	Sigmoid Colon
30	chr15:57333200-57341200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
31	chr15:57333400-57349400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
32	chr15:57334000-57341000	Weak transcription	NH-A	brain
33	chr15:57334000-57345000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
34	chr15:57334000-57346000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
35	chr15:57334000-57346200	Weak transcription	Rectal Smooth Muscle	rectum
36	chr15:57334200-57343600	Weak transcription	Cortex derived primary cultured neurospheres	brain
37	chr15:57335000-57347400	Weak transcription	Lung	lung
38	chr15:57335200-57338000	Weak transcription	Esophagus	oesophagus
39	chr15:57335200-57338200	Enhancers	Fetal Heart	heart
40	chr15:57335200-57341400	Weak transcription	Fetal Kidney	kidney
41	chr15:57335200-57341600	Weak transcription	HUES6 Cell Line	embryonic stem cell
42	chr15:57335400-57349000	Weak transcription	NHEK	skin
43	chr15:57335600-57345400	Weak transcription	HUVEC	blood vessel
44	chr15:57335800-57343400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
45	chr15:57336200-57339400	Enhancers	Brain Substantia Nigra	brain
46	chr15:57336200-57339600	Enhancers	Primary T cells from cord blood	blood
47	chr15:57336400-57341400	Weak transcription	HUES64 Cell Line	embryonic stem cell
48	chr15:57336400-57345000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
49	chr15:57336600-57338400	Enhancers	Brain Hippocampus Middle	brain
50	chr15:57336600-57349200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin

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