Variant report

Variant	rs2952304
Chromosome Location	chr17:66585822-66585823
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr17:66585160..66586935-chr17:66601716..66603246,2	MCF-7	breast:

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs2907393	0.81[ASN][1000 genomes]
rs2952303	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2952307	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2952310	0.81[ASN][1000 genomes]
rs4968906	0.81[ASN][1000 genomes]
rs67000278	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833524	chr17:66524030-66705194	Enhancers Weak transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:66539200-66588000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
2	chr17:66551800-66587800	Weak transcription	H1 Cell Line	embryonic stem cell
3	chr17:66572200-66591800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr17:66576800-66588000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr17:66577200-66592600	Weak transcription	Right Ventricle	heart
6	chr17:66578200-66594000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
7	chr17:66581400-66590400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
8	chr17:66582000-66587800	Weak transcription	Skeletal Muscle Female	skeletal muscle
9	chr17:66582000-66591800	Weak transcription	Left Ventricle	heart
10	chr17:66582200-66586200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr17:66582200-66589000	Weak transcription	Fetal Heart	heart
12	chr17:66582200-66592600	Weak transcription	Gastric	stomach
13	chr17:66583000-66588800	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr17:66583800-66589000	Weak transcription	Brain Angular Gyrus	brain
15	chr17:66584200-66586400	Strong transcription	ES-I3 Cell Line	embryonic stem cell
16	chr17:66584200-66588600	Genic enhancers	Liver	Liver
17	chr17:66584400-66586800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr17:66584400-66587800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
19	chr17:66584600-66588000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
20	chr17:66585400-66592800	Weak transcription	HUES48 Cell Line	embryonic stem cell
21	chr17:66585400-66594200	Weak transcription	HUES64 Cell Line	embryonic stem cell
22	chr17:66585600-66586200	Weak transcription	Pancreatic Islets	Pancreatic Islet
23	chr17:66585600-66587000	Weak transcription	Placenta	Placenta
24	chr17:66585600-66587600	Weak transcription	Osteobl	bone
25	chr17:66585600-66587800	Weak transcription	NHDF-Ad	bronchial
26	chr17:66585600-66590000	Weak transcription	Fetal Thymus	thymus
27	chr17:66585600-66591400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
28	chr17:66585600-66591600	Weak transcription	Aorta	Aorta
29	chr17:66585600-66591600	Weak transcription	Lung	lung
30	chr17:66585800-66586600	Weak transcription	HUES6 Cell Line	embryonic stem cell
31	chr17:66585800-66586800	Weak transcription	HepG2	liver
32	chr17:66585800-66587200	Genic enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links