Variant report

Variant	rs2954378
Chromosome Location	chr5:113452981-113452982
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs2954361	0.84[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs2954362	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2954364	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2974456	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2974457	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2974460	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2974461	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2974462	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2974463	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2974464	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2974465	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2974466	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2974467	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882726	chr5:113404933-113555626	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv1020064	chr5:113418512-113492951	Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:113445600-113453200	Weak transcription	Right Ventricle	heart
2	chr5:113449600-113455200	Weak transcription	Psoas Muscle	Psoas
3	chr5:113452600-113453200	Enhancers	Skeletal Muscle Female	skeletal muscle
4	chr5:113452600-113456000	Enhancers	Fetal Heart	heart
5	chr5:113452800-113453200	Enhancers	Fetal Muscle Leg	muscle
6	chr5:113452800-113453200	Enhancers	Left Ventricle	heart

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links