Variant report

Variant	rs295460
Chromosome Location	chr3:47366799-47366800
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:47365290..47367273-chr3:47411803..47414319,2	K562	blood:
2	chr3:47321694..47325254-chr3:47364540..47367485,3	K562	blood:
3	chr3:47114506..47116285-chr3:47366485..47368143,2	K562	blood:
4	chr3:47304767..47306689-chr3:47364605..47367397,2	K562	blood:

Variant related genes	Relation type
ENSG00000088727	Chromatin interaction
ENSG00000114648	Chromatin interaction

Extended variants
information (count: 2 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs924009	0.80[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv876756	chr3:47002931-47586514	Strong transcription Enhancers Weak transcription Transcr. at gene 5' and 3' Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	79 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:47325600-47367600	Weak transcription	A549	lung
2	chr3:47333800-47371400	Weak transcription	Psoas Muscle	Psoas
3	chr3:47338600-47369800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
4	chr3:47338600-47371200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
5	chr3:47345000-47370000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
6	chr3:47356400-47371200	Weak transcription	Pancreatic Islets	Pancreatic Islet
7	chr3:47356800-47382600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
8	chr3:47357200-47368800	Weak transcription	Primary hematopoietic stem cells	blood
9	chr3:47357200-47374800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
10	chr3:47358800-47387000	Strong transcription	Monocytes-CD14+_RO01746	blood
11	chr3:47359400-47385000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr3:47359400-47387200	Strong transcription	Primary monocytes fromperipheralblood	blood
13	chr3:47359400-47387800	Strong transcription	Spleen	Spleen
14	chr3:47359600-47386800	Strong transcription	Primary T cells fromperipheralblood	blood
15	chr3:47360000-47382600	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
16	chr3:47360000-47388200	Strong transcription	Fetal Intestine Large	intestine
17	chr3:47360400-47387000	Strong transcription	iPS-18 Cell Line	embryonic stem cell
18	chr3:47360400-47388000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
19	chr3:47360600-47387000	Strong transcription	Primary T helper cells PMA-I stimulated	--
20	chr3:47360600-47387200	Strong transcription	Primary B cells from peripheral blood	blood
21	chr3:47360600-47387600	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
22	chr3:47360600-47387600	Strong transcription	Fetal Thymus	thymus
23	chr3:47360600-47387800	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
24	chr3:47360600-47387800	Strong transcription	Sigmoid Colon	Sigmoid Colon
25	chr3:47360600-47388200	Strong transcription	Duodenum Mucosa	Duodenum
26	chr3:47360600-47388800	Strong transcription	Primary T cells from cord blood	blood
27	chr3:47360800-47368600	Strong transcription	Fetal Intestine Small	intestine
28	chr3:47360800-47375200	Weak transcription	Fetal Heart	heart
29	chr3:47360800-47378800	Weak transcription	Fetal Kidney	kidney
30	chr3:47360800-47386800	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
31	chr3:47360800-47388000	Strong transcription	Primary neutrophils fromperipheralblood	blood
32	chr3:47361000-47367400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
33	chr3:47361000-47370200	Strong transcription	Aorta	Aorta
34	chr3:47361000-47381800	Strong transcription	Dnd41	blood
35	chr3:47361000-47382800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
36	chr3:47361000-47387400	Strong transcription	Rectal Mucosa Donor 29	rectum
37	chr3:47361000-47387800	Strong transcription	Brain Cingulate Gyrus	brain
38	chr3:47361000-47388000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
39	chr3:47361000-47388200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
40	chr3:47361000-47388200	Strong transcription	Fetal Muscle Trunk	muscle
41	chr3:47361200-47367800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
42	chr3:47361200-47369200	Strong transcription	H9 Cell Line	embryonic stem cell
43	chr3:47361200-47372000	Strong transcription	HepG2	liver
44	chr3:47361200-47378800	Strong transcription	Fetal Muscle Leg	muscle
45	chr3:47361200-47383200	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
46	chr3:47361200-47387600	Strong transcription	HUES48 Cell Line	embryonic stem cell
47	chr3:47361200-47388000	Strong transcription	Adipose Nuclei	Adipose
48	chr3:47361200-47388000	Strong transcription	Stomach Smooth Muscle	stomach
49	chr3:47361400-47388000	Strong transcription	iPS-20b Cell Line	embryonic stem cell
50	chr3:47361400-47389800	Weak transcription	Right Atrium	heart

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