Variant report

Variant	rs2955733
Chromosome Location	chr15:76364087-76364088
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 6 )

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs2255701	0.92[GIH][hapmap]
rs2460798	0.92[GIH][hapmap]
rs2959842	0.81[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs334930	1.00[GIH][hapmap];0.84[LWK][hapmap]
rs335681	0.92[GIH][hapmap]
rs335697	0.92[GIH][hapmap]
rs335711	0.92[GIH][hapmap]
rs4886753	1.00[GIH][hapmap]
rs985849	0.92[GIH][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv569998	chr15:76232605-76550938	Enhancers Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
2	nsv1048760	chr15:76334544-76496977	Enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Weak transcription Bivalent Enhancer Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

mRNA abundance (count:6)

SNP	Gene	Cis/trans	Tissue	Source
rs2955733	NRG4	cis	cerebellum	SCAN
rs2955733	LRRC49	cis	cerebellum	SCAN
rs2955733	C15orf60	cis	parietal	SCAN
rs2955733	TMEM202	cis	parietal	SCAN
rs2955733	NRG4	cis	parietal	SCAN
rs2955733	C15orf27	cis	lung	GTEx

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:76353200-76365800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr15:76358400-76370400	Weak transcription	Psoas Muscle	Psoas
3	chr15:76361400-76370200	Weak transcription	Skeletal Muscle Female	skeletal muscle
4	chr15:76363000-76364200	Enhancers	Placenta Amnion	Placenta Amnion
5	chr15:76363200-76364200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr15:76363600-76364600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr15:76363600-76366000	Enhancers	Placenta	Placenta
8	chr15:76363800-76364200	Enhancers	Lung	lung
9	chr15:76363800-76367000	Weak transcription	Primary neutrophils fromperipheralblood	blood
10	chr15:76363800-76367600	Weak transcription	Monocytes-CD14+_RO01746	blood
11	chr15:76364000-76364200	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
12	chr15:76364000-76366000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr15:76364000-76367400	Weak transcription	Primary monocytes fromperipheralblood	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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