Variant report

Variant	rs2955760
Chromosome Location	chr15:76443664-76443665
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:76442105..76446396-chr15:76447199..76450761,5	MCF-7	breast:
2	chr15:76349862..76350383-chr15:76442992..76443858,2	MCF-7	breast:
3	chr15:76435308..76437788-chr15:76443138..76445810,3	K562	blood:
4	chr15:76435308..76438673-chr15:76443082..76445810,3	K562	blood:
5	chr15:76440836..76444169-chr15:76451014..76453553,3	MCF-7	breast:
6	chr15:76221299..76222193-chr15:76443491..76444002,2	MCF-7	breast:

Extended variants
information (count: 21 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs2935968	1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];0.80[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs2935977	0.85[ASN][1000 genomes]
rs2955727	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs2955732	0.80[GIH][hapmap];0.83[YRI][hapmap]
rs2955747	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2959862	0.82[GIH][hapmap]
rs2959864	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs2959866	0.90[CHB][hapmap];0.85[JPT][hapmap];0.85[ASN][1000 genomes]
rs61639986	0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv569998	chr15:76232605-76550938	Enhancers Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
2	nsv1048760	chr15:76334544-76496977	Enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Weak transcription Bivalent Enhancer Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv833057	chr15:76367848-76585868	ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Weak transcription Enhancers Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
4	nsv1039595	chr15:76431374-76483342	Enhancers Bivalent Enhancer Genic enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	8 gene(s)	inside rSNPs	diseases
5	nsv1045860	chr15:76431374-76485536	Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region	9 gene(s)	inside rSNPs	diseases
6	nsv1053643	chr15:76431374-76485966	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	9 gene(s)	inside rSNPs	diseases
7	nsv1052496	chr15:76432823-76484981	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Genic enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	8 gene(s)	inside rSNPs	diseases
8	nsv1036319	chr15:76432823-76489955	Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	8 gene(s)	inside rSNPs	diseases
9	nsv1035806	chr15:76435640-76483342	Flanking Active TSS Bivalent Enhancer Enhancers Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases
10	nsv1047539	chr15:76435640-76485966	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region	8 gene(s)	inside rSNPs	diseases
11	nsv1042750	chr15:76435640-76490547	ZNF genes & repeats Enhancers Bivalent/Poised TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	8 gene(s)	inside rSNPs	diseases
12	nsv1054289	chr15:76437970-76485966	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region	8 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs2955760	SCAPER	cis	parietal	SCAN

Chromatin state (count:55 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:76433000-76452800	Weak transcription	Right Atrium	heart
2	chr15:76440400-76444400	Enhancers	NHDF-Ad	bronchial
3	chr15:76440400-76444600	Enhancers	Placenta	Placenta
4	chr15:76440400-76445000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr15:76440400-76447000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr15:76440600-76444400	Enhancers	NHLF	lung
7	chr15:76440800-76445200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
8	chr15:76440800-76445600	Weak transcription	Spleen	Spleen
9	chr15:76441400-76443800	Enhancers	Fetal Stomach	stomach
10	chr15:76441400-76444200	Enhancers	HSMM	muscle
11	chr15:76441600-76444000	Enhancers	Muscle Satellite Cultured Cells	--
12	chr15:76441800-76444200	Enhancers	HSMMtube	muscle
13	chr15:76442200-76444000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr15:76442400-76444200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr15:76442400-76444400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
16	chr15:76442400-76445400	Enhancers	Skeletal Muscle Male	skeletal muscle
17	chr15:76442600-76443800	Enhancers	HUES48 Cell Line	embryonic stem cell
18	chr15:76442600-76446400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
19	chr15:76442600-76446400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
20	chr15:76442800-76443800	Enhancers	Brain Inferior Temporal Lobe	brain
21	chr15:76442800-76444000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
22	chr15:76442800-76444000	Enhancers	Primary T helper cells PMA-I stimulated	--
23	chr15:76442800-76444400	Enhancers	iPS-20b Cell Line	embryonic stem cell
24	chr15:76442800-76444600	Enhancers	ES-I3 Cell Line	embryonic stem cell
25	chr15:76442800-76444600	Enhancers	ES-WA7 Cell Line	embryonic stem cell
26	chr15:76442800-76444800	Enhancers	HUES6 Cell Line	embryonic stem cell
27	chr15:76442800-76445000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
28	chr15:76442800-76446400	Enhancers	H1 Cell Line	embryonic stem cell
29	chr15:76443000-76444200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
30	chr15:76443000-76444400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
31	chr15:76443000-76444600	Enhancers	iPS-15b Cell Line	embryonic stem cell
32	chr15:76443000-76453800	Weak transcription	Placenta Amnion	Placenta Amnion
33	chr15:76443200-76443800	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
34	chr15:76443200-76444000	Enhancers	A549	lung
35	chr15:76443200-76444400	Enhancers	HMEC	breast
36	chr15:76443200-76444400	Enhancers	NHEK	skin
37	chr15:76443200-76444600	Enhancers	HUES64 Cell Line	embryonic stem cell
38	chr15:76443200-76444600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
39	chr15:76443200-76444800	Enhancers	iPS-18 Cell Line	embryonic stem cell
40	chr15:76443200-76447200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
41	chr15:76443200-76447200	Enhancers	Breast Myoepithelial Primary Cells	Breast
42	chr15:76443200-76483000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
43	chr15:76443400-76443800	Enhancers	Primary hematopoietic stem cells short term culture	blood
44	chr15:76443400-76443800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
45	chr15:76443400-76443800	Weak transcription	Psoas Muscle	Psoas
46	chr15:76443400-76444000	Enhancers	Primary T cells fromperipheralblood	blood
47	chr15:76443400-76444000	Enhancers	Osteobl	bone
48	chr15:76443400-76444200	Flanking Active TSS	Hela-S3	cervix
49	chr15:76443400-76444400	Enhancers	GM12878-XiMat	blood
50	chr15:76443400-76444600	Weak transcription	Pancreas	Pancrea

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