Variant report

Variant	rs2957503
Chromosome Location	chr11:34225551-34225552
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:34224684..34227193-chr11:34228730..34230616,2	K562	blood:
2	chr11:34224045..34226285-chr11:34321256..34323357,2	MCF-7	breast:
3	chr11:34224648..34227495-chr11:34231430..34234571,3	K562	blood:
4	chr11:34225108..34229701-chr11:34377567..34379685,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000166016	Chromatin interaction

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs2955943	1.00[MEX][hapmap]
rs2955944	0.82[LWK][hapmap];1.00[MEX][hapmap];0.95[MKK][hapmap];1.00[AMR][1000 genomes]
rs2955946	1.00[AMR][1000 genomes]
rs2957498	0.88[MKK][hapmap]
rs2957500	1.00[AMR][1000 genomes]
rs2957504	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:14 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1849370	chr11:34218849-34225647	Weak transcription Enhancers Strong transcription Genic enhancers Bivalent Enhancer Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	esv2757435	chr11:34220504-34370236	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	esv2759816	chr11:34220504-34370236	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Strong transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	esv1848893	chr11:34220507-34225647	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	esv1844284	chr11:34220507-34225950	Weak transcription Genic enhancers Enhancers Bivalent Enhancer Strong transcription Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv8806	chr11:34220554-34226369	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	esv3459308	chr11:34220590-34226157	Enhancers Weak transcription Genic enhancers Strong transcription Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
8	esv3459319	chr11:34220622-34226150	Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
9	nsv825834	chr11:34220632-34225798	Genic enhancers Enhancers Weak transcription Flanking Active TSS Strong transcription Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
10	esv1845247	chr11:34220654-34225798	Enhancers Weak transcription Strong transcription Bivalent Enhancer Genic enhancers Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
11	esv1846069	chr11:34220654-34225798	Enhancers Weak transcription Bivalent Enhancer Strong transcription Genic enhancers Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
12	esv3459341	chr11:34220654-34226061	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
13	esv3459330	chr11:34220660-34226094	Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
14	esv3459352	chr11:34220660-34226094	Enhancers Weak transcription Genic enhancers Flanking Active TSS Strong transcription Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:84 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:34203400-34228200	Weak transcription	Psoas Muscle	Psoas
2	chr11:34207200-34226000	Weak transcription	Gastric	stomach
3	chr11:34208200-34235200	Weak transcription	Adipose Nuclei	Adipose
4	chr11:34210600-34226600	Weak transcription	Pancreas	Pancrea
5	chr11:34214600-34228000	Weak transcription	Brain Angular Gyrus	brain
6	chr11:34215000-34228200	Weak transcription	Brain Inferior Temporal Lobe	brain
7	chr11:34215000-34228400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
8	chr11:34215000-34235800	Weak transcription	Brain Anterior Caudate	brain
9	chr11:34215200-34226400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr11:34215200-34226400	Weak transcription	Osteobl	bone
11	chr11:34215200-34227400	Weak transcription	Brain Substantia Nigra	brain
12	chr11:34215200-34228200	Weak transcription	Duodenum Mucosa	Duodenum
13	chr11:34215600-34228200	Weak transcription	Right Atrium	heart
14	chr11:34215600-34232600	Weak transcription	Fetal Brain Female	brain
15	chr11:34216000-34225600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
16	chr11:34216000-34228200	Weak transcription	Brain Cingulate Gyrus	brain
17	chr11:34216200-34226600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr11:34216600-34228400	Weak transcription	Lung	lung
19	chr11:34218800-34226600	Weak transcription	HSMM	muscle
20	chr11:34218800-34228200	Weak transcription	Skeletal Muscle Male	skeletal muscle
21	chr11:34218800-34236600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
22	chr11:34219000-34226200	Weak transcription	Skeletal Muscle Female	skeletal muscle
23	chr11:34219000-34228000	Weak transcription	Fetal Intestine Small	intestine
24	chr11:34219000-34240800	Weak transcription	Left Ventricle	heart
25	chr11:34219200-34236600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
26	chr11:34219600-34226000	Weak transcription	Esophagus	oesophagus
27	chr11:34223200-34226400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
28	chr11:34223400-34227800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
29	chr11:34223400-34228000	Weak transcription	Brain Hippocampus Middle	brain
30	chr11:34223800-34225800	Strong transcription	Liver	Liver
31	chr11:34223800-34226800	Weak transcription	Fetal Brain Male	brain
32	chr11:34223800-34228000	Weak transcription	Fetal Lung	lung
33	chr11:34224400-34226000	Strong transcription	Stomach Smooth Muscle	stomach
34	chr11:34224600-34225600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
35	chr11:34224600-34225600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
36	chr11:34224600-34225600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
37	chr11:34224600-34226000	Enhancers	Primary hematopoietic stem cells short term culture	blood
38	chr11:34224600-34226200	Enhancers	Fetal Thymus	thymus
39	chr11:34224600-34226200	Enhancers	Hela-S3	cervix
40	chr11:34224600-34228200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
41	chr11:34224600-34229200	Enhancers	H1 Cell Line	embryonic stem cell
42	chr11:34224800-34225600	Enhancers	H9 Cell Line	embryonic stem cell
43	chr11:34224800-34225600	Enhancers	Primary monocytes fromperipheralblood	blood
44	chr11:34224800-34225600	Enhancers	Primary T cells from cord blood	blood
45	chr11:34224800-34225600	Enhancers	Primary hematopoietic stem cells	blood
46	chr11:34224800-34225600	Genic enhancers	Placenta	Placenta
47	chr11:34224800-34225600	Enhancers	Ovary	ovary
48	chr11:34224800-34225600	Enhancers	Monocytes-CD14+_RO01746	blood
49	chr11:34224800-34225800	Enhancers	Fetal Muscle Leg	muscle
50	chr11:34224800-34225800	Enhancers	Thymus	Thymus

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