Variant report

Variant	rs2957935
Chromosome Location	chr17:46316234-46316235
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr17:46301003..46302784-chr17:46314559..46316930,2	K562	blood:
2	chr17:46237804..46239741-chr17:46316113..46318637,2	MCF-7	breast:
3	chr17:46260519..46263689-chr17:46315938..46318852,3	K562	blood:

Variant related genes	Relation type
ENSG00000263787	Chromatin interaction
ENSG00000141293	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10514935	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12600464	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs12600478	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap]
rs1317850	0.82[JPT][hapmap];1.00[YRI][hapmap]
rs2240123	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap]
rs2938484	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8076163	0.82[JPT][hapmap]

No data

Chromatin state (count:41 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:46266800-46318200	Weak transcription	Primary B cells from peripheral blood	blood
2	chr17:46294000-46318000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
3	chr17:46305200-46317600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
4	chr17:46306600-46335400	Weak transcription	Thymus	Thymus
5	chr17:46312800-46318800	Enhancers	HUVEC	blood vessel
6	chr17:46313000-46318000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr17:46313400-46316400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
8	chr17:46313400-46316400	Weak transcription	Primary T cells fromperipheralblood	blood
9	chr17:46314000-46318000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr17:46314000-46318200	Enhancers	NHDF-Ad	bronchial
11	chr17:46314200-46320200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
12	chr17:46314600-46316600	Weak transcription	K562	blood
13	chr17:46315000-46316400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
14	chr17:46315000-46316400	Weak transcription	NH-A	brain
15	chr17:46315000-46317600	Weak transcription	Muscle Satellite Cultured Cells	--
16	chr17:46315000-46317800	Weak transcription	Hela-S3	cervix
17	chr17:46315000-46318000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
18	chr17:46315000-46318000	Enhancers	A549	lung
19	chr17:46315200-46316600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
20	chr17:46315200-46317200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
21	chr17:46315200-46317400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
22	chr17:46315200-46317600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
23	chr17:46315200-46317800	Weak transcription	Primary T cells from cord blood	blood
24	chr17:46315200-46317800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
25	chr17:46315200-46317800	Weak transcription	NHLF	lung
26	chr17:46315200-46318000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
27	chr17:46315200-46319400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
28	chr17:46315400-46316400	Weak transcription	NHEK	skin
29	chr17:46315400-46317600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
30	chr17:46315600-46317800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
31	chr17:46315800-46316400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
32	chr17:46315800-46316400	Enhancers	GM12878-XiMat	blood
33	chr17:46315800-46319600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
34	chr17:46315800-46319600	Enhancers	HMEC	breast
35	chr17:46315800-46319800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
36	chr17:46315800-46319800	Enhancers	HSMM	muscle
37	chr17:46315800-46319800	Enhancers	Osteobl	bone
38	chr17:46315800-46323000	Enhancers	Primary T helper cells PMA-I stimulated	--
39	chr17:46316000-46317600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
40	chr17:46316000-46318600	Weak transcription	Right Atrium	heart
41	chr17:46316200-46316600	Enhancers	Primary T helper cells fromperipheralblood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links