Variant report

Variant	rs2959067
Chromosome Location	chr11:4078892-4078893
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs2920137	0.89[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs2920140	0.83[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs2920141	0.83[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs2920142	0.81[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs7104462	0.84[AFR][1000 genomes]
rs7924858	0.82[AFR][1000 genomes];0.85[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv896896	chr11:4010409-4185595	Strong transcription Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
2	nsv1042719	chr11:4017541-4101609	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	esv2758253	chr11:4055945-4510188	Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	38 gene(s)	inside rSNPs	diseases
4	esv2759797	chr11:4055945-4510188	Active TSS Flanking Active TSS Strong transcription Weak transcription Enhancers ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	38 gene(s)	inside rSNPs	diseases
5	nsv428248	chr11:4055945-4510188	Weak transcription Strong transcription Flanking Active TSS Genic enhancers Enhancers Bivalent/Poised TSS Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	38 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:97 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:4051000-4080400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr11:4062000-4080400	Weak transcription	Spleen	Spleen
3	chr11:4066000-4079200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr11:4066200-4079000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
5	chr11:4066200-4079200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr11:4066200-4104200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
7	chr11:4066400-4107800	Weak transcription	Small Intestine	intestine
8	chr11:4066600-4080200	Weak transcription	Right Ventricle	heart
9	chr11:4066600-4080400	Weak transcription	Fetal Lung	lung
10	chr11:4066600-4080400	Weak transcription	Gastric	stomach
11	chr11:4066600-4085800	Weak transcription	Pancreas	Pancrea
12	chr11:4067000-4079200	Weak transcription	Colon Smooth Muscle	Colon
13	chr11:4067000-4087400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
14	chr11:4067800-4079200	Weak transcription	Placenta Amnion	Placenta Amnion
15	chr11:4067800-4080400	Weak transcription	Brain Hippocampus Middle	brain
16	chr11:4067800-4080600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
17	chr11:4067800-4093200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
18	chr11:4068000-4079000	Weak transcription	Cortex derived primary cultured neurospheres	brain
19	chr11:4068000-4079200	Weak transcription	Rectal Smooth Muscle	rectum
20	chr11:4068000-4079400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
21	chr11:4068000-4080200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
22	chr11:4068000-4080200	Weak transcription	Psoas Muscle	Psoas
23	chr11:4068200-4079000	Weak transcription	HUVEC	blood vessel
24	chr11:4070800-4108600	Weak transcription	HSMM	muscle
25	chr11:4071000-4083600	Weak transcription	Fetal Brain Male	brain
26	chr11:4071600-4080400	Weak transcription	Aorta	Aorta
27	chr11:4071800-4080600	Weak transcription	Colonic Mucosa	Colon
28	chr11:4073000-4093200	Weak transcription	Fetal Intestine Small	intestine
29	chr11:4075800-4083200	Strong transcription	Primary T cells from cord blood	blood
30	chr11:4076000-4080600	Weak transcription	HSMMtube	muscle
31	chr11:4076000-4087000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
32	chr11:4076200-4081600	Weak transcription	A549	lung
33	chr11:4076200-4103000	Weak transcription	Fetal Intestine Large	intestine
34	chr11:4076600-4085200	Strong transcription	Dnd41	blood
35	chr11:4076800-4081400	Strong transcription	Skeletal Muscle Male	skeletal muscle
36	chr11:4076800-4082600	Strong transcription	Fetal Muscle Trunk	muscle
37	chr11:4076800-4082600	Strong transcription	Thymus	Thymus
38	chr11:4076800-4083200	Strong transcription	Liver	Liver
39	chr11:4077200-4080600	Weak transcription	Brain Angular Gyrus	brain
40	chr11:4077400-4080400	Weak transcription	HepG2	liver
41	chr11:4077600-4079800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
42	chr11:4077600-4080200	Genic enhancers	Monocytes-CD14+_RO01746	blood
43	chr11:4077800-4079000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
44	chr11:4077800-4079200	Genic enhancers	Primary T helper cells PMA-I stimulated	--
45	chr11:4077800-4079400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
46	chr11:4077800-4079600	Genic enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
47	chr11:4077800-4079800	Genic enhancers	Primary T helper naive cells fromperipheralblood	blood
48	chr11:4078000-4079200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
49	chr11:4078000-4079200	Weak transcription	Rectal Mucosa Donor 31	rectum
50	chr11:4078000-4079400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links