Variant report

Variant	rs2960301
Chromosome Location	chr4:3063270-3063271
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs2471331	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2471332	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2471333	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2960299	0.82[AFR][1000 genomes]
rs2960300	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3418626	chr4:2741174-3461492	Genic enhancers Weak transcription Active TSS Strong transcription Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	63 gene(s)	inside rSNPs	diseases
2	esv3397632	chr4:2741239-3460583	Enhancers Flanking Active TSS Weak transcription Genic enhancers Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	63 gene(s)	inside rSNPs	diseases
3	nsv461163	chr4:2906285-3234980	Enhancers Strong transcription Flanking Active TSS Genic enhancers Weak transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	52 gene(s)	inside rSNPs	diseases
4	nsv593437	chr4:2906285-3234980	Genic enhancers Active TSS Strong transcription Enhancers Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	52 gene(s)	inside rSNPs	diseases
5	esv13277	chr4:3059756-3069436	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Genic enhancers Bivalent/Poised TSS Strong transcription	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:3048200-3075200	Weak transcription	Right Atrium	heart
2	chr4:3049600-3074800	Weak transcription	Lung	lung
3	chr4:3053800-3064600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr4:3058200-3075200	Weak transcription	Psoas Muscle	Psoas
5	chr4:3059600-3065200	Enhancers	Primary monocytes fromperipheralblood	blood
6	chr4:3060400-3063800	Weak transcription	Placenta	Placenta
7	chr4:3060800-3074800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
8	chr4:3061000-3064000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
9	chr4:3061000-3074800	Weak transcription	Spleen	Spleen
10	chr4:3061600-3064000	Weak transcription	Primary B cells from peripheral blood	blood
11	chr4:3061600-3068400	Weak transcription	Primary B cells from cord blood	blood
12	chr4:3061600-3075000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
13	chr4:3061800-3063600	Enhancers	Primary neutrophils fromperipheralblood	blood
14	chr4:3062200-3075000	Weak transcription	Adipose Nuclei	Adipose
15	chr4:3062600-3074000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
16	chr4:3062600-3074000	Weak transcription	Skeletal Muscle Female	skeletal muscle
17	chr4:3063000-3064800	Enhancers	Monocytes-CD14+_RO01746	blood

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links