Variant report

Variant rs2960345
Chromosome Location chr19:38997214-38997215
allele G/T
Outlinks Ensembl   UCSC
Chromatin state (count:49 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr19:38934800-39005600 Strong transcription Fetal Muscle Leg muscle
2 chr19:38940000-39006400 Weak transcription HSMM muscle
3 chr19:38947600-38997400 Strong transcription Fetal Muscle Trunk muscle
4 chr19:38960800-39034400 Strong transcription Skeletal Muscle Female skeletal muscle
5 chr19:38963000-39033000 Strong transcription Skeletal Muscle Male skeletal muscle
6 chr19:38976800-39005400 Weak transcription Brain Anterior Caudate brain
7 chr19:38981600-39005600 Weak transcription Brain Substantia Nigra brain
8 chr19:38981800-39005400 Weak transcription Brain Inferior Temporal Lobe brain
9 chr19:38982200-39005600 Weak transcription Brain Hippocampus Middle brain
10 chr19:38982400-38997400 Weak transcription Pancreas Pancrea
11 chr19:38985200-39081800 Weak transcription Psoas Muscle Psoas
12 chr19:38988200-39005400 Weak transcription Breast Myoepithelial Primary Cells Breast
13 chr19:38989400-39000000 Strong transcription H9 Cell Line embryonic stem cell
14 chr19:38989800-38999200 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
15 chr19:38990400-38997400 Weak transcription Esophagus oesophagus
16 chr19:38990600-38997600 Strong transcription iPS-20b Cell Line embryonic stem cell
17 chr19:38993400-38997600 Strong transcription HSMMtube muscle
18 chr19:38996200-39007800 Weak transcription Right Atrium heart
19 chr19:38996800-38997400 Bivalent Enhancer ES-WA7 Cell Line embryonic stem cell
20 chr19:38996800-38997600 Enhancers ES-UCSF4 Cell Line embryonic stem cell
21 chr19:38997000-38997600 Enhancers iPS-18 Cell Line embryonic stem cell
22 chr19:38997000-38997600 Enhancers iPS DF 6.9 Cell Line embryonic stem cell
23 chr19:38997000-38997600 Enhancers Primary T regulatory cells fromperipheralblood blood
24 chr19:38997000-38997600 Flanking Active TSS K562 blood
25 chr19:38997000-38997800 Bivalent Enhancer Primary T cells fromperipheralblood blood
26 chr19:38997000-38997800 Enhancers Primary T helper naive cells fromperipheralblood blood
27 chr19:38997000-38997800 Enhancers Primary T helper cells fromperipheralblood blood
28 chr19:38997000-38997800 Enhancers Spleen Spleen
29 chr19:38997000-38998800 Genic enhancers H1 Cell Line embryonic stem cell
30 chr19:38997200-38997400 Bivalent Enhancer ES-I3 Cell Line embryonic stem cell
31 chr19:38997200-38997400 Enhancers iPS DF 19.11 Cell Line embryonic stem cell
32 chr19:38997200-38997400 Enhancers Primary T helper cells PMA-I stimulated --
33 chr19:38997200-38997400 Enhancers Foreskin Melanocyte Primary Cells skin01 Skin
34 chr19:38997200-38997400 Active TSS Hela-S3 cervix
35 chr19:38997200-38997400 Enhancers Monocytes-CD14+_RO01746 blood
36 chr19:38997200-38997600 Genic enhancers HUES48 Cell Line embryonic stem cell
37 chr19:38997200-38997600 Flanking Active TSS HUES6 Cell Line embryonic stem cell
38 chr19:38997200-38997600 Enhancers HUES64 Cell Line embryonic stem cell
39 chr19:38997200-38997600 Genic enhancers iPS-15b Cell Line embryonic stem cell
40 chr19:38997200-38997600 Enhancers Primary hematopoietic stem cells blood
41 chr19:38997200-38997600 Bivalent Enhancer Primary hematopoietic stem cells short term culture blood
42 chr19:38997200-38997600 Enhancers Primary T killer memory cells from peripheral blood blood
43 chr19:38997200-38997600 Flanking Active TSS A549 lung
44 chr19:38997200-38997800 Enhancers Colonic Mucosa Colon
45 chr19:38997200-38998000 Bivalent Enhancer Placenta Placenta
46 chr19:38997200-38998400 ZNF genes & repeats Primary monocytes fromperipheralblood blood
47 chr19:38997200-38998400 Enhancers Foreskin Keratinocyte Primary Cells skin03 Skin
48 chr19:38997200-38998600 Enhancers Primary T helper naive cells from peripheral blood blood
49 chr19:38997200-38998600 Enhancers Primary Natural Killer cells fromperipheralblood blood

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