Variant report

Variant	rs2961615
Chromosome Location	chr10:4852338-4852339
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:4844826..4847362-chr10:4849459..4852602,3	K562	blood:

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs11252843	1.00[EUR][1000 genomes]
rs11252852	1.00[EUR][1000 genomes]
rs11814708	1.00[EUR][1000 genomes]
rs12254797	1.00[EUR][1000 genomes]
rs12265755	1.00[EUR][1000 genomes]
rs28805383	1.00[EUR][1000 genomes]
rs2924282	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2924290	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv894787	chr10:4385379-4857717	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
2	nsv894792	chr10:4832920-5498724	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:4846000-4854200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr10:4847400-4854000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr10:4848800-4852800	Enhancers	HUVEC	blood vessel
4	chr10:4849400-4852600	Enhancers	NHDF-Ad	bronchial
5	chr10:4849800-4852600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr10:4850000-4852600	Enhancers	HSMM	muscle
7	chr10:4850000-4853800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
8	chr10:4850400-4853600	Weak transcription	Monocytes-CD14+_RO01746	blood
9	chr10:4850600-4852600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr10:4850800-4852400	Enhancers	Muscle Satellite Cultured Cells	--
11	chr10:4850800-4852400	Enhancers	A549	lung
12	chr10:4850800-4852400	Enhancers	HSMMtube	muscle
13	chr10:4850800-4853200	Weak transcription	Primary monocytes fromperipheralblood	blood
14	chr10:4851000-4852800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
15	chr10:4851000-4854600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr10:4851000-4854800	Weak transcription	NHEK	skin
17	chr10:4851200-4854000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
18	chr10:4851400-4853800	Weak transcription	NHLF	lung
19	chr10:4851400-4854000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
20	chr10:4851800-4852800	Bivalent Enhancer	HepG2	liver
21	chr10:4851800-4853200	Enhancers	Cortex derived primary cultured neurospheres	brain
22	chr10:4852000-4852600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
23	chr10:4852000-4852800	Enhancers	NH-A	brain
24	chr10:4852200-4852600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
25	chr10:4852200-4852600	Enhancers	Brain Germinal Matrix	brain
26	chr10:4852200-4852600	Enhancers	Osteobl	bone
27	chr10:4852200-4853400	Weak transcription	HMEC	breast
28	chr10:4852200-4854400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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