Variant report

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs1462120	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs184160	0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2579040	0.96[ASN][1000 genomes]
rs2910022	0.96[ASN][1000 genomes]
rs2910024	1.00[ASN][1000 genomes]
rs2910026	0.96[ASN][1000 genomes]
rs2910029	0.88[ASN][1000 genomes]
rs2910030	0.92[ASN][1000 genomes]
rs294699	1.00[ASN][1000 genomes]
rs294700	0.96[ASN][1000 genomes]
rs294704	0.96[ASN][1000 genomes]
rs294708	1.00[ASN][1000 genomes]
rs296182	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2962808	0.96[ASN][1000 genomes]
rs2962810	1.00[ASN][1000 genomes]
rs2962816	0.92[ASN][1000 genomes]
rs2962819	0.92[ASN][1000 genomes]
rs2962826	0.84[ASN][1000 genomes]
rs2973138	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2973145	0.88[ASN][1000 genomes]
rs2973146	0.92[ASN][1000 genomes]
rs2973156	0.88[ASN][1000 genomes]
rs2973157	0.88[ASN][1000 genomes]
rs72791545	0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023676	chr5:151979253-152925064	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv537927	chr5:151979253-152925064	Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv883050	chr5:152277537-152540026	Enhancers Weak transcription Bivalent/Poised TSS ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv949596	chr5:152343943-152548821	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:152516000-152527600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr5:152523600-152527600	Weak transcription	Aorta	Aorta
3	chr5:152523600-152527600	Weak transcription	Pancreas	Pancrea
4	chr5:152523600-152527800	Weak transcription	Gastric	stomach
5	chr5:152527400-152527600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr5:152527400-152528000	Enhancers	HMEC	breast

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