Variant report

Variant	rs2964225
Chromosome Location	chr5:151937982-151937983
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10053277	0.81[EUR][1000 genomes]
rs10061873	0.81[EUR][1000 genomes]
rs17452090	0.81[EUR][1000 genomes]
rs28663290	0.81[EUR][1000 genomes]
rs28687145	0.80[EUR][1000 genomes]
rs2961747	0.81[EUR][1000 genomes]
rs2964223	0.97[AFR][1000 genomes];0.93[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2964224	0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4407620	0.81[EUR][1000 genomes]
rs4475248	0.81[EUR][1000 genomes]
rs4569857	0.81[EUR][1000 genomes]
rs4958557	0.81[EUR][1000 genomes]
rs4958559	0.81[EUR][1000 genomes]
rs55858427	0.81[EUR][1000 genomes]
rs56012817	0.81[EUR][1000 genomes]
rs72795354	0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023828	chr5:151522149-151956217	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:151934800-151938400	Enhancers	Brain Germinal Matrix	brain
2	chr5:151936000-151938200	Enhancers	Fetal Brain Male	brain
3	chr5:151937000-151946200	Weak transcription	Brain Cingulate Gyrus	brain
4	chr5:151937000-151946800	Weak transcription	Brain Substantia Nigra	brain
5	chr5:151937600-151940400	Weak transcription	Cortex derived primary cultured neurospheres	brain
6	chr5:151937800-151944000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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