Variant report

Variant	rs2964422
Chromosome Location	chr5:5247593-5247594
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs2913614	1.00[AMR][1000 genomes]
rs2913622	1.00[AMR][1000 genomes]
rs2913634	1.00[AMR][1000 genomes]
rs2913636	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2913637	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2964424	1.00[AMR][1000 genomes]
rs2964425	1.00[AMR][1000 genomes]
rs2964434	1.00[AMR][1000 genomes]
rs61585346	1.00[AMR][1000 genomes]
rs73039923	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024784	chr5:4980979-5391231	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
2	nsv1032719	chr5:5102763-5387406	Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv537621	chr5:5102763-5387406	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:5185200-5262800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr5:5200200-5252800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
3	chr5:5224400-5253800	Weak transcription	Fetal Kidney	kidney
4	chr5:5230200-5255400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr5:5234600-5252600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
6	chr5:5236800-5255400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
7	chr5:5238000-5250200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr5:5239400-5263000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
9	chr5:5240800-5263000	Weak transcription	H9 Cell Line	embryonic stem cell
10	chr5:5241400-5248600	Strong transcription	NH-A	brain
11	chr5:5242400-5253800	Weak transcription	Pancreas	Pancrea
12	chr5:5242600-5250000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr5:5244600-5248200	Strong transcription	Ovary	ovary
14	chr5:5244600-5252800	Weak transcription	HUES6 Cell Line	embryonic stem cell
15	chr5:5244600-5266400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
16	chr5:5245400-5252600	Weak transcription	HUES48 Cell Line	embryonic stem cell
17	chr5:5245600-5248400	Enhancers	Fetal Brain Male	brain
18	chr5:5246600-5253800	Weak transcription	HUES64 Cell Line	embryonic stem cell
19	chr5:5247200-5248400	Weak transcription	Fetal Brain Female	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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