Variant report

Variant	rs2964661
Chromosome Location	chr5:116021892-116021893
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs1027289	1.00[CEU][hapmap]
rs163809	1.00[CEU][hapmap]
rs2416444	0.89[EUR][1000 genomes]
rs2933590	0.88[EUR][1000 genomes]
rs2933618	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2933647	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2964654	0.80[EUR][1000 genomes]
rs2964664	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs647914	0.84[EUR][1000 genomes]
rs7378909	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2763490	chr5:115918339-116138525	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv830456	chr5:115969066-116170718	Bivalent Enhancer Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv527974	chr5:115987168-116303678	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv462403	chr5:115994775-116284378	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv599485	chr5:115994775-116284378	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	nsv1030056	chr5:116008971-116278725	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:116016000-116032000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr5:116018800-116022200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr5:116020800-116022200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr5:116020800-116022800	Enhancers	ES-I3 Cell Line	embryonic stem cell
5	chr5:116021200-116022200	Weak transcription	HUES48 Cell Line	embryonic stem cell
6	chr5:116021800-116022200	Enhancers	iPS-20b Cell Line	embryonic stem cell
7	chr5:116021800-116022600	Enhancers	iPS-15b Cell Line	embryonic stem cell
8	chr5:116021800-116022600	Enhancers	iPS-18 Cell Line	embryonic stem cell
9	chr5:116021800-116022600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
10	chr5:116021800-116022800	Enhancers	HUES6 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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