Variant report

Variant	rs296621
Chromosome Location	chr9:93860919-93860920
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs186122	0.86[EUR][1000 genomes]
rs296619	1.00[CEU][hapmap]
rs365426	0.83[EUR][1000 genomes]
rs369473	0.83[EUR][1000 genomes]
rs377013	0.83[EUR][1000 genomes]
rs379712	0.83[EUR][1000 genomes]
rs386591	0.83[EUR][1000 genomes]
rs388254	0.83[EUR][1000 genomes]
rs416826	0.86[EUR][1000 genomes]
rs418408	0.83[EUR][1000 genomes]
rs421610	0.83[EUR][1000 genomes]
rs426054	0.83[EUR][1000 genomes]
rs435017	0.83[EUR][1000 genomes]
rs443917	0.86[EUR][1000 genomes]
rs447149	0.92[EUR][1000 genomes]
rs447365	0.86[EUR][1000 genomes]
rs454860	0.86[EUR][1000 genomes]
rs582337	1.00[CEU][hapmap]
rs773278	0.86[EUR][1000 genomes]
rs773279	0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1052912	chr9:93846078-93866362	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Active TSS	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:93852600-93861600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr9:93852800-93861200	Weak transcription	NHLF	lung
3	chr9:93859600-93861200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr9:93859800-93865200	Enhancers	Fetal Heart	heart
5	chr9:93860400-93861000	Enhancers	Placenta	Placenta
6	chr9:93860400-93861200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr9:93860400-93862200	Enhancers	Left Ventricle	heart
8	chr9:93860400-93863400	Enhancers	Placenta Amnion	Placenta Amnion
9	chr9:93860600-93861000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr9:93860600-93862000	Enhancers	Right Atrium	heart
11	chr9:93860600-93862200	Enhancers	Fetal Lung	lung
12	chr9:93860600-93864200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
13	chr9:93860600-93864200	Enhancers	Brain Germinal Matrix	brain
14	chr9:93860600-93865000	Enhancers	Fetal Muscle Leg	muscle
15	chr9:93860600-93865000	Enhancers	Skeletal Muscle Female	skeletal muscle
16	chr9:93860800-93861200	Enhancers	Lung	lung
17	chr9:93860800-93862200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
18	chr9:93860800-93864000	Enhancers	Primary hematopoietic stem cells	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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