Variant report

Variant	rs2967399
Chromosome Location	chr16:82235303-82235304
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr16:82227788..82230560-chr16:82233020..82235910,2	K562	blood:

Extended variants
information (count: 75 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:65)

rs_ID	r²[population]
rs11640213	0.84[EUR][1000 genomes]
rs11862388	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1364288	0.91[MEX][hapmap];0.80[AMR][1000 genomes]
rs1424152	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1424158	0.86[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs16956683	0.82[ASN][1000 genomes]
rs1844727	0.91[CEU][hapmap]
rs1979649	0.91[CEU][hapmap];1.00[MEX][hapmap];0.82[TSI][hapmap];0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1979650	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1979652	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1979653	0.91[CEU][hapmap];0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2042426	0.85[GIH][hapmap];0.91[MEX][hapmap];0.91[TSI][hapmap];0.95[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2042427	0.95[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2317884	0.91[CEU][hapmap];1.00[MEX][hapmap];0.82[TSI][hapmap]
rs2911410	0.95[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2911411	0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2911413	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2911416	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2932814	0.91[CEU][hapmap];1.00[MEX][hapmap];0.82[TSI][hapmap];0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2932817	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2932818	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2932836	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2932837	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2932839	0.91[CEU][hapmap];0.95[CHB][hapmap];0.86[JPT][hapmap];0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2932840	0.91[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2967336	0.82[EUR][1000 genomes]
rs2967337	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2967338	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2967339	0.91[CEU][hapmap];1.00[MEX][hapmap];0.82[TSI][hapmap];0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2967340	0.91[CEU][hapmap];0.88[MEX][hapmap];0.91[TSI][hapmap];0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2967341	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2967345	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2967346	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2967347	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2967348	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2967388	0.85[GIH][hapmap];0.87[MEX][hapmap];0.95[TSI][hapmap];0.94[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2967391	1.00[CEU][hapmap];0.90[CHB][hapmap];0.84[CHD][hapmap];0.85[GIH][hapmap];0.81[JPT][hapmap];0.95[TSI][hapmap];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2967393	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2967394	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2967395	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2967398	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2967410	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs34629110	0.80[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs35268560	0.84[AMR][1000 genomes]
rs4344737	0.80[EUR][1000 genomes]
rs4516225	0.80[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs57676882	0.80[AMR][1000 genomes]
rs66765750	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs67779658	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs71388379	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7192520	0.80[AMR][1000 genomes]
rs7498251	0.83[AMR][1000 genomes]
rs7500500	0.84[AMR][1000 genomes]
rs7500585	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7500717	0.84[AMR][1000 genomes]
rs7500862	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs8049396	0.88[ASN][1000 genomes]
rs902542	0.91[CEU][hapmap];0.91[GIH][hapmap];0.91[TSI][hapmap];0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs902543	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs929892	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9708960	0.83[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs9745812	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9932036	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9940988	0.83[AMR][1000 genomes]
rs9941073	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532598	chr16:82034475-82738733	Active TSS Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	28 gene(s)	inside rSNPs	diseases
2	nsv532599	chr16:82074439-82926863	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	27 gene(s)	inside rSNPs	diseases
3	nsv573367	chr16:82140561-83040846	Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	27 gene(s)	inside rSNPs	diseases
4	nsv833302	chr16:82188351-82363863	Weak transcription Strong transcription Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
5	esv1844598	chr16:82195234-82429790	Enhancers Bivalent/Poised TSS Active TSS Flanking Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
6	esv1847414	chr16:82195234-82429790	Enhancers Active TSS Weak transcription Strong transcription Genic enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
7	nsv532600	chr16:82197554-82314289	Enhancers Weak transcription Active TSS Genic enhancers Bivalent Enhancer Strong transcription Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
8	nsv907015	chr16:82203758-82284056	Active TSS Weak transcription Bivalent Enhancer Enhancers Bivalent/Poised TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
9	nsv1065896	chr16:82213517-82731994	Flanking Active TSS Enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	11 gene(s)	inside rSNPs	diseases
10	nsv907016	chr16:82235303-82280548	ZNF genes & repeats Weak transcription Bivalent/Poised TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:82231800-82238600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr16:82235000-82236600	Enhancers	Rectal Smooth Muscle	rectum
3	chr16:82235000-82237000	Enhancers	Colon Smooth Muscle	Colon

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links