Variant report

Variant	rs2970390
Chromosome Location	chr15:60210629-60210630
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs2970389	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2970391	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv904280	chr15:60042722-60524025	Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	esv2760398	chr15:60208658-60243534	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv1553	chr15:60209361-60234943	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:60209600-60211400	Enhancers	iPS-15b Cell Line	embryonic stem cell
2	chr15:60209600-60212600	Enhancers	Dnd41	blood
3	chr15:60209800-60212800	Enhancers	Primary T helper cells PMA-I stimulated	--
4	chr15:60210000-60211000	Enhancers	HUES48 Cell Line	embryonic stem cell
5	chr15:60210000-60211400	Weak transcription	HMEC	breast
6	chr15:60210000-60212400	Enhancers	Primary T cells from cord blood	blood
7	chr15:60210200-60211400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr15:60210200-60211400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
9	chr15:60210200-60211400	Weak transcription	Primary T helper cells fromperipheralblood	blood
10	chr15:60210200-60211600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
11	chr15:60210200-60211600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
12	chr15:60210400-60211200	Weak transcription	Primary T cells fromperipheralblood	blood
13	chr15:60210400-60211400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
14	chr15:60210400-60211400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
15	chr15:60210400-60211600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
16	chr15:60210400-60211600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
17	chr15:60210400-60211600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
18	chr15:60210600-60211000	Enhancers	Brain Germinal Matrix	brain
19	chr15:60210600-60211400	Weak transcription	HUES6 Cell Line	embryonic stem cell
20	chr15:60210600-60211400	Enhancers	Primary T regulatory cells fromperipheralblood	blood
21	chr15:60210600-60211600	Weak transcription	HUES64 Cell Line	embryonic stem cell
22	chr15:60210600-60212000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
23	chr15:60210600-60212800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--

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