Variant report

Variant	rs2972860
Chromosome Location	chr5:75632323-75632324
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr5:75620781..75623735-chr5:75631052..75633279,2	MCF-7	breast:
2	chr5:75630696..75632382-chr5:75666521..75668676,2	K562	blood:
3	chr5:75621687..75623947-chr5:75631428..75633046,3	K562	blood:
4	chr5:75620579..75623947-chr5:75630745..75632949,3	K562	blood:

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs2913248	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2913251	0.87[ASN][1000 genomes]
rs2937739	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1027368	chr5:74759999-75663712	Active TSS Strong transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
2	nsv870415	chr5:75526088-75738412	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv1032033	chr5:75609686-75646482	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv1023310	chr5:75609686-75651786	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	esv3425598	chr5:75610980-75647048	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	esv2757120	chr5:75611597-75642974	Flanking Active TSS Weak transcription ZNF genes & repeats Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
7	esv2759352	chr5:75611597-75642974	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
8	nsv1028669	chr5:75611597-75643598	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
9	nsv1020853	chr5:75611597-75651786	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
10	esv3362900	chr5:75631096-75637594	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:46 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:75622600-75633600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr5:75622800-75634000	Weak transcription	Esophagus	oesophagus
3	chr5:75627400-75632800	Weak transcription	Primary neutrophils fromperipheralblood	blood
4	chr5:75627800-75633400	Weak transcription	Adipose Nuclei	Adipose
5	chr5:75628000-75633400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr5:75628200-75633400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
7	chr5:75628200-75633400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
8	chr5:75628200-75633400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
9	chr5:75628200-75633400	Weak transcription	Fetal Muscle Leg	muscle
10	chr5:75628200-75633600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
11	chr5:75628200-75633600	Weak transcription	Pancreas	Pancrea
12	chr5:75628200-75633600	Weak transcription	Rectal Mucosa Donor 31	rectum
13	chr5:75628400-75633400	Weak transcription	Primary T cells fromperipheralblood	blood
14	chr5:75628600-75633200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
15	chr5:75628600-75633400	Weak transcription	Stomach Mucosa	stomach
16	chr5:75628600-75633800	Weak transcription	Liver	Liver
17	chr5:75628800-75633400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
18	chr5:75628800-75633400	Weak transcription	Duodenum Mucosa	Duodenum
19	chr5:75628800-75633600	Weak transcription	Primary T cells from cord blood	blood
20	chr5:75628800-75633600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
21	chr5:75629000-75633400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
22	chr5:75629000-75633400	Weak transcription	Primary T helper cells PMA-I stimulated	--
23	chr5:75629000-75633400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
24	chr5:75629000-75633600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
25	chr5:75629000-75633600	Weak transcription	H9 Cell Line	embryonic stem cell
26	chr5:75629400-75633400	Weak transcription	Primary T helper cells fromperipheralblood	blood
27	chr5:75629600-75632800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
28	chr5:75629600-75633400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
29	chr5:75629600-75633400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
30	chr5:75629600-75633600	Weak transcription	Fetal Thymus	thymus
31	chr5:75629600-75637800	Weak transcription	Cortex derived primary cultured neurospheres	brain
32	chr5:75629800-75633200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
33	chr5:75629800-75638000	Weak transcription	HepG2	liver
34	chr5:75631000-75633200	Weak transcription	Primary hematopoietic stem cells	blood
35	chr5:75631000-75633200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
36	chr5:75631000-75633600	Weak transcription	Fetal Stomach	stomach
37	chr5:75631200-75632600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
38	chr5:75631200-75633000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
39	chr5:75631200-75633600	Weak transcription	K562	blood
40	chr5:75632000-75633800	Weak transcription	Sigmoid Colon	Sigmoid Colon
41	chr5:75632200-75632400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
42	chr5:75632200-75632600	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
43	chr5:75632200-75632600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
44	chr5:75632200-75632800	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
45	chr5:75632200-75632800	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
46	chr5:75632200-75633400	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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