Variant report

Variant	rs297325
Chromosome Location	chr11:16389594-16389595
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:16389241..16392002-chr11:16405954..16407703,2	K562	blood:
2	chr11:16383712..16391203-chr11:16391970..16396695,10	K562	blood:
3	chr11:16389058..16392285-chr11:16392287..16396695,4	K562	blood:
4	chr11:16367238..16369863-chr11:16387081..16389640,2	K562	blood:

Extended variants
information (count: 35 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10500830	0.89[CEU][hapmap];0.92[JPT][hapmap];0.85[MEX][hapmap];0.86[TSI][hapmap]
rs10741698	0.94[CEU][hapmap];0.94[CHB][hapmap];0.94[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.89[LWK][hapmap];0.80[MEX][hapmap];1.00[MKK][hapmap];0.93[TSI][hapmap];1.00[YRI][hapmap]
rs10766324	0.94[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap]
rs10832604	0.94[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap]
rs10832607	0.94[CEU][hapmap];0.94[CHB][hapmap];0.94[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.94[LWK][hapmap];0.85[MEX][hapmap];1.00[MKK][hapmap];0.93[TSI][hapmap];1.00[YRI][hapmap]
rs10832609	0.94[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap]
rs10832610	0.94[CEU][hapmap];0.94[CHB][hapmap];0.94[CHD][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];0.85[MEX][hapmap];0.87[TSI][hapmap]
rs10832619	0.84[CEU][hapmap];1.00[JPT][hapmap];0.85[MEX][hapmap];0.86[TSI][hapmap]
rs11023934	0.94[CEU][hapmap];0.94[CHB][hapmap];0.94[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.85[MEX][hapmap];0.93[TSI][hapmap]
rs11023942	0.94[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap]
rs11023947	0.94[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap]
rs12221729	0.94[CEU][hapmap];0.94[CHB][hapmap];0.94[CHD][hapmap];0.83[GIH][hapmap];1.00[JPT][hapmap];0.93[TSI][hapmap]
rs1393924	0.94[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap]
rs1393926	0.94[CHB][hapmap];0.94[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.85[MEX][hapmap];0.83[TSI][hapmap]
rs1503440	0.94[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs16933105	0.94[CEU][hapmap];0.94[CHB][hapmap];0.94[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.84[MEX][hapmap];0.93[TSI][hapmap]
rs16933117	0.94[CEU][hapmap];0.94[CHB][hapmap];0.93[JPT][hapmap]
rs1948824	0.94[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap]
rs2174164	0.94[CEU][hapmap];0.94[CHB][hapmap];0.94[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.85[MEX][hapmap];1.00[MKK][hapmap];0.93[TSI][hapmap];1.00[YRI][hapmap]
rs297327	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs297328	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs297332	0.81[ASN][1000 genomes]
rs297335	0.94[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs297337	0.93[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap]
rs297338	0.94[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs4756850	0.94[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap]
rs4756851	0.94[CHB][hapmap];1.00[JPT][hapmap]
rs4757397	0.94[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs4757398	0.94[CEU][hapmap];0.94[CHB][hapmap];0.94[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.88[LWK][hapmap];0.85[MEX][hapmap];1.00[MKK][hapmap];0.93[TSI][hapmap];1.00[YRI][hapmap]
rs4757402	0.94[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap]
rs4757403	0.94[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap]
rs7951243	0.94[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap]
rs7951760	0.94[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529731	chr11:16122782-16468170	Enhancers Active TSS Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv553566	chr11:16329009-16799044	Strong transcription Weak transcription Enhancers Bivalent/Poised TSS ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases

Variant related diseases (count:1)

Disease	PMID	Source
Obesity and osteoporosis	19714249	GWAS catalog

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:16385000-16390200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr11:16387800-16392000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr11:16388000-16391400	Weak transcription	K562	blood
4	chr11:16388200-16397000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr11:16388200-16414200	Weak transcription	Fetal Intestine Small	intestine
6	chr11:16389200-16397800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin

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